| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
Click here to switch to the map view.
The map label for this gene is 117920684
Identifier: 117920684
GI number: 117920684
Start: 2695078
End: 2695512
Strand: Direct
Name: 117920684
Synonym: Shewana3_2241
Alternate gene names: NA
Gene position: 2695078-2695512 (Clockwise)
Preceding gene: 117920683
Following gene: 117920685
Centisome position: 54.2
GC content: 43.22
Gene sequence:
>435_bases ATGCCAAGATTAGATACAAGGTTGGAAGCTGAGGGGGCTGAATTTTTGGTTCTAGGCCAGCTTCTGTTACACAAGATCGC CTCGTATAAAACGTATACGAACATGCCGGGCTATGATTTGGTTGCAACAAATCCTGAATCAAATAAATCTGCCATGGTTC AGGTCAAAAGTAGGTGGCGCACTGGTGCTGGCGGCTTTCCCATCAAAAACTTCGGCTGTGATTTCGTTGTTGTGGTTTTG CTTAATCGCGGTTCAAAAGATGGCAAAAAAGAAGTTCTGCCACCAAGGTATTATGTTTTTCCTGTTGGTGTAATTGAGTC TGCTCCACGCAGCAAAGACTGGGGCAAAGTAAATCTCAAAGATATTCCCAACTACGAAGCATATGAGGAGAAATGGCATT TAATCTCTGAGTTTCTTGGTGAGTCAAATGCCTAA
Upstream 100 bases:
>100_bases GGCAATGAAGAGCCCTAACAAACCGCAGAAGTCGCTCCCGTTGGTCGCTGGGACCGCCATTGTCGGCCCCTGTGCGCGGC GTTAAGCATCAAGGAGTCAC
Downstream 100 bases:
>100_bases CAAGTTAAACAGCGGAAAACCACTCGCTGCGCTAGCGTTTTCCGCTGTTTAAAGCATCACTCCATAGAAATTGTAATCCG AAACTCATAAGTTAGAGTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 144; Mature: 143
Protein sequence:
>144_residues MPRLDTRLEAEGAEFLVLGQLLLHKIASYKTYTNMPGYDLVATNPESNKSAMVQVKSRWRTGAGGFPIKNFGCDFVVVVL LNRGSKDGKKEVLPPRYYVFPVGVIESAPRSKDWGKVNLKDIPNYEAYEEKWHLISEFLGESNA
Sequences:
>Translated_144_residues MPRLDTRLEAEGAEFLVLGQLLLHKIASYKTYTNMPGYDLVATNPESNKSAMVQVKSRWRTGAGGFPIKNFGCDFVVVVL LNRGSKDGKKEVLPPRYYVFPVGVIESAPRSKDWGKVNLKDIPNYEAYEEKWHLISEFLGESNA >Mature_143_residues PRLDTRLEAEGAEFLVLGQLLLHKIASYKTYTNMPGYDLVATNPESNKSAMVQVKSRWRTGAGGFPIKNFGCDFVVVVLL NRGSKDGKKEVLPPRYYVFPVGVIESAPRSKDWGKVNLKDIPNYEAYEEKWHLISEFLGESNA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16211; Mature: 16080
Theoretical pI: Translated: 8.92; Mature: 8.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRLDTRLEAEGAEFLVLGQLLLHKIASYKTYTNMPGYDLVATNPESNKSAMVQVKSRWR CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHEEEHHHCC TGAGGFPIKNFGCDFVVVVLLNRGSKDGKKEVLPPRYYVFPVGVIESAPRSKDWGKVNLK CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECHHHCCCCCCCCCCEEECC DIPNYEAYEEKWHLISEFLGESNA CCCCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure PRLDTRLEAEGAEFLVLGQLLLHKIASYKTYTNMPGYDLVATNPESNKSAMVQVKSRWR CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHEEEHHHCC TGAGGFPIKNFGCDFVVVVLLNRGSKDGKKEVLPPRYYVFPVGVIESAPRSKDWGKVNLK CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECHHHCCCCCCCCCCEEECC DIPNYEAYEEKWHLISEFLGESNA CCCCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA