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The map label for this gene is tcp [H]

Identifier: 117920659

GI number: 117920659

Start: 2662258

End: 2664231

Strand: Reverse

Name: tcp [H]

Synonym: Shewana3_2216

Alternate gene names: 117920659

Gene position: 2664231-2662258 (Counterclockwise)

Preceding gene: 117920660

Following gene: 117920658

Centisome position: 53.58

GC content: 50.66

Gene sequence:

>1974_bases
ATGGGTATTTTCAATGTGTTTGGAAATGAAGAGGCGCGCCAGCAAAAGGAAGAAGAGCTGCAACGCTATTTCCAATTATT
AGATAACAGCGGCAACAGCTTTATGATCGCCGACAGCAACCGCAATATTATCTACGCCAATAAAGCGGTATTGAATATGT
TATCCGAGGCCGAGGCGGATATTCGCAAAGAGCTGCCGCAGTTCTCTGTGGCCAAGGTGGTGGGCAGTAATATCGATATT
TTCCATAAAAATCCGGCTCATCAACGCAATATGCTCGAGCGCCTTACCCAATCCCATACGGCGCAAATCACCATAGGTAA
ACGGACTTTTAAGCTGATCCTCACACCCATTATCACACGTGAAAATAAGCACTTAGGCACGGGCGTTGAATGGATTGATA
GAACAGAGAGCATAGAGTCCGAGCGGGCGACGCAGCGCATTTTAGAGGCGCTGAATAATACTAGTACCAATGTGATGATC
GCCGATGCCAACCGCACCATTATCTATATGAACCGCTCGGTGGAATCGATGCTGCGCCAATCTGAGAGTGAGATAAGACA
AGCGCTGCCGCATTTCTCCGTGGATAAAATTCTTGGCAGCTCGATGGATATTTTCCATAAGAATCCAGCCCATCAAGCCA
GTCTGTTAGACAAGCTCGATCGTAAATATGAATCGCAGATCAAAGTGGCCAGTTGTCACTTCCGCTTAACCGCAAGCCCG
ATTATTTCTAAAACGGGTGAGCGGTTAGGCTCTGTCGTCGAATGGCTGGACCGTACGGTCGAAGTGCAAATCGAGCAAGA
AATCTCGCGCATCGTCAATGCGGCTGCGGCGGGGGATTTCTCCCAACGGGCCGAGACGCAAGGTAAGCAGGGCTTCTTCT
TGATGCTCGCCAATAGCCTCAATGCCTTGATTGAAACCTCGGATCGCGGTTTGCAGGATGTGGCGCGGGTGTTGATGGCG
CTCGCCGAAGGTGATTTAACCACGCGTATCTATAACGATTACGAAGGCACCTTTAATGATTTGAAAAACTATTCAAATCA
AACGGCTGAAAAGCTCTCTTACATGATAAGAGACATTCAAAAAGCCGCCGATACCATCAATACCGCCTCTTCTGAAATCG
CCCAGGGCAATGCCGATTTATCGAGTCGTACCGAGGAGCAAGCATCGAGTCTTGAACAAACCTCAGCGAGTATGGAAGAG
CTGACGGGCACAGTGAAGTTAAATGCCGATAACGCCAGTCAAGCCAATGCACTTGCCTCTAAGGCCGCCGACGTTGCCGT
CGATGGGGGCGAGCTTATCCAGCAAGTGGTGCAAACCATGGCATCGATTAACGAATCGGCACGTAAGATCGCCGATATTA
TTGGGGTTATCGATGGCATTGCCTTCCAAACCAATATCTTAGCGCTTAATGCCGCGGTCGAAGCGGCCAGAGCCGGCGAG
CAAGGCCGTGGATTTGCGGTGGTGGCCTCAGAGGTGAGAAGCCTGGCACAACGTTCGGCCAACGCGGCCAAGGACATTAA
GGCCTTGATCTCAGACTCTGTGACCAAAATCGAGAGTGGCAACAGTTTAGTCGGCAAATCCGGCGATACTATGAAAGAAA
TCGTCATCGCCATTAAACGGGTGAACGATATTATGGCCGAAATTGCCTCGGCCTCGAATGAGCAGGCCATCGGCATCGAT
GAGATCAGCAAAGCCGTAGTACAAATGGATGAAATGACGCAGCAAAACGCGGCCTTAGTGGAAGAAGCCGCCGCCGCAGC
CGAAAGCATGCAGTCACAGGCGCAGCAGTTAGCCGACAGTGTGGCGAACTTTACCGTGGATGAAGACACCAGCGCTGCGC
CCAAATCCGTGGCGAGCACCAAAAAGTTAGCGGTTAAGCAACCGCCATCGACAGTGACTCGCATGCCCGTGAAACCTAAG
GCGATGGCGCCAAAGGTCAATAAAGCCGACCAAGACGAATGGGAAGATTTTTGA

Upstream 100 bases:

>100_bases
AAGACAAGATGATCATTTTGGTAAATATACAGGCTCTGATCAGCAGTGATGAGCTGGGTCTAATTGATGCAAATAGTCTG
TCTGATCAGGAGTAATCATA

Downstream 100 bases:

>100_bases
TTGAGCGAACATCAACCTCTAGGGAAAGAGTTTGTTTTTACGGCGGCGCACTTTAATACGGTGAAGACACGGCTGTATCA
ATTTGCCGGGATTAAGTTAG

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: Citrate chemoreceptor protein [H]

Number of amino acids: Translated: 657; Mature: 656

Protein sequence:

>657_residues
MGIFNVFGNEEARQQKEEELQRYFQLLDNSGNSFMIADSNRNIIYANKAVLNMLSEAEADIRKELPQFSVAKVVGSNIDI
FHKNPAHQRNMLERLTQSHTAQITIGKRTFKLILTPIITRENKHLGTGVEWIDRTESIESERATQRILEALNNTSTNVMI
ADANRTIIYMNRSVESMLRQSESEIRQALPHFSVDKILGSSMDIFHKNPAHQASLLDKLDRKYESQIKVASCHFRLTASP
IISKTGERLGSVVEWLDRTVEVQIEQEISRIVNAAAAGDFSQRAETQGKQGFFLMLANSLNALIETSDRGLQDVARVLMA
LAEGDLTTRIYNDYEGTFNDLKNYSNQTAEKLSYMIRDIQKAADTINTASSEIAQGNADLSSRTEEQASSLEQTSASMEE
LTGTVKLNADNASQANALASKAADVAVDGGELIQQVVQTMASINESARKIADIIGVIDGIAFQTNILALNAAVEAARAGE
QGRGFAVVASEVRSLAQRSANAAKDIKALISDSVTKIESGNSLVGKSGDTMKEIVIAIKRVNDIMAEIASASNEQAIGID
EISKAVVQMDEMTQQNAALVEEAAAAAESMQSQAQQLADSVANFTVDEDTSAAPKSVASTKKLAVKQPPSTVTRMPVKPK
AMAPKVNKADQDEWEDF

Sequences:

>Translated_657_residues
MGIFNVFGNEEARQQKEEELQRYFQLLDNSGNSFMIADSNRNIIYANKAVLNMLSEAEADIRKELPQFSVAKVVGSNIDI
FHKNPAHQRNMLERLTQSHTAQITIGKRTFKLILTPIITRENKHLGTGVEWIDRTESIESERATQRILEALNNTSTNVMI
ADANRTIIYMNRSVESMLRQSESEIRQALPHFSVDKILGSSMDIFHKNPAHQASLLDKLDRKYESQIKVASCHFRLTASP
IISKTGERLGSVVEWLDRTVEVQIEQEISRIVNAAAAGDFSQRAETQGKQGFFLMLANSLNALIETSDRGLQDVARVLMA
LAEGDLTTRIYNDYEGTFNDLKNYSNQTAEKLSYMIRDIQKAADTINTASSEIAQGNADLSSRTEEQASSLEQTSASMEE
LTGTVKLNADNASQANALASKAADVAVDGGELIQQVVQTMASINESARKIADIIGVIDGIAFQTNILALNAAVEAARAGE
QGRGFAVVASEVRSLAQRSANAAKDIKALISDSVTKIESGNSLVGKSGDTMKEIVIAIKRVNDIMAEIASASNEQAIGID
EISKAVVQMDEMTQQNAALVEEAAAAAESMQSQAQQLADSVANFTVDEDTSAAPKSVASTKKLAVKQPPSTVTRMPVKPK
AMAPKVNKADQDEWEDF
>Mature_656_residues
GIFNVFGNEEARQQKEEELQRYFQLLDNSGNSFMIADSNRNIIYANKAVLNMLSEAEADIRKELPQFSVAKVVGSNIDIF
HKNPAHQRNMLERLTQSHTAQITIGKRTFKLILTPIITRENKHLGTGVEWIDRTESIESERATQRILEALNNTSTNVMIA
DANRTIIYMNRSVESMLRQSESEIRQALPHFSVDKILGSSMDIFHKNPAHQASLLDKLDRKYESQIKVASCHFRLTASPI
ISKTGERLGSVVEWLDRTVEVQIEQEISRIVNAAAAGDFSQRAETQGKQGFFLMLANSLNALIETSDRGLQDVARVLMAL
AEGDLTTRIYNDYEGTFNDLKNYSNQTAEKLSYMIRDIQKAADTINTASSEIAQGNADLSSRTEEQASSLEQTSASMEEL
TGTVKLNADNASQANALASKAADVAVDGGELIQQVVQTMASINESARKIADIIGVIDGIAFQTNILALNAAVEAARAGEQ
GRGFAVVASEVRSLAQRSANAAKDIKALISDSVTKIESGNSLVGKSGDTMKEIVIAIKRVNDIMAEIASASNEQAIGIDE
ISKAVVQMDEMTQQNAALVEEAAAAAESMQSQAQQLADSVANFTVDEDTSAAPKSVASTKKLAVKQPPSTVTRMPVKPKA
MAPKVNKADQDEWEDF

Specific function: Acts as a receptor for citrate and mediates taxis away from phenol. Also mediates an attractant response to metal-citrate complexes [H]

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788195, Length=338, Percent_Identity=51.1834319526627, Blast_Score=291, Evalue=1e-79,
Organism=Escherichia coli, GI2367378, Length=348, Percent_Identity=53.448275862069, Blast_Score=285, Evalue=6e-78,
Organism=Escherichia coli, GI1787690, Length=311, Percent_Identity=52.7331189710611, Blast_Score=282, Evalue=4e-77,
Organism=Escherichia coli, GI1788194, Length=302, Percent_Identity=53.6423841059603, Blast_Score=280, Evalue=2e-76,
Organism=Escherichia coli, GI1789453, Length=248, Percent_Identity=43.9516129032258, Blast_Score=202, Evalue=5e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR003122
- InterPro:   IPR004091
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 71737; Mature: 71606

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS50885 HAMP ; PS50112 PAS ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIFNVFGNEEARQQKEEELQRYFQLLDNSGNSFMIADSNRNIIYANKAVLNMLSEAEAD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHHHHHHH
IRKELPQFSVAKVVGSNIDIFHKNPAHQRNMLERLTQSHTAQITIGKRTFKLILTPIITR
HHHHCCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCC
ENKHLGTGVEWIDRTESIESERATQRILEALNNTSTNVMIADANRTIIYMNRSVESMLRQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEECCHHHHHHHH
SESEIRQALPHFSVDKILGSSMDIFHKNPAHQASLLDKLDRKYESQIKVASCHFRLTASP
HHHHHHHHCCCCCHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEECCH
IISKTGERLGSVVEWLDRTVEVQIEQEISRIVNAAAAGDFSQRAETQGKQGFFLMLANSL
HHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEHHHH
NALIETSDRGLQDVARVLMALAEGDLTTRIYNDYEGTFNDLKNYSNQTAEKLSYMIRDIQ
HHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KAADTINTASSEIAQGNADLSSRTEEQASSLEQTSASMEELTGTVKLNADNASQANALAS
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH
KAADVAVDGGELIQQVVQTMASINESARKIADIIGVIDGIAFQTNILALNAAVEAARAGE
HHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QGRGFAVVASEVRSLAQRSANAAKDIKALISDSVTKIESGNSLVGKSGDTMKEIVIAIKR
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
VNDIMAEIASASNEQAIGIDEISKAVVQMDEMTQQNAALVEEAAAAAESMQSQAQQLADS
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VANFTVDEDTSAAPKSVASTKKLAVKQPPSTVTRMPVKPKAMAPKVNKADQDEWEDF
HHCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GIFNVFGNEEARQQKEEELQRYFQLLDNSGNSFMIADSNRNIIYANKAVLNMLSEAEAD
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHHHHHHH
IRKELPQFSVAKVVGSNIDIFHKNPAHQRNMLERLTQSHTAQITIGKRTFKLILTPIITR
HHHHCCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCC
ENKHLGTGVEWIDRTESIESERATQRILEALNNTSTNVMIADANRTIIYMNRSVESMLRQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEECCHHHHHHHH
SESEIRQALPHFSVDKILGSSMDIFHKNPAHQASLLDKLDRKYESQIKVASCHFRLTASP
HHHHHHHHCCCCCHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEECCH
IISKTGERLGSVVEWLDRTVEVQIEQEISRIVNAAAAGDFSQRAETQGKQGFFLMLANSL
HHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEHHHH
NALIETSDRGLQDVARVLMALAEGDLTTRIYNDYEGTFNDLKNYSNQTAEKLSYMIRDIQ
HHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KAADTINTASSEIAQGNADLSSRTEEQASSLEQTSASMEELTGTVKLNADNASQANALAS
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH
KAADVAVDGGELIQQVVQTMASINESARKIADIIGVIDGIAFQTNILALNAAVEAARAGE
HHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QGRGFAVVASEVRSLAQRSANAAKDIKALISDSVTKIESGNSLVGKSGDTMKEIVIAIKR
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
VNDIMAEIASASNEQAIGIDEISKAVVQMDEMTQQNAALVEEAAAAAESMQSQAQQLADS
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VANFTVDEDTSAAPKSVASTKKLAVKQPPSTVTRMPVKPKAMAPKVNKADQDEWEDF
HHCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8419927; 11677609 [H]