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The map label for this gene is ybiT [H]

Identifier: 117920652

GI number: 117920652

Start: 2654270

End: 2655862

Strand: Direct

Name: ybiT [H]

Synonym: Shewana3_2209

Alternate gene names: 117920652

Gene position: 2654270-2655862 (Clockwise)

Preceding gene: 117920651

Following gene: 117920655

Centisome position: 53.38

GC content: 48.71

Gene sequence:

>1593_bases
TTGATCTCTACCGCAAATATCACCATGCAATTCGGCCCAGAGCCATTATTTGAAAATATCTCGGCAAAATTTGGCAACGG
CAACCGTTATGGTTTGATTGGCGCAAACGGCTGCGGCAAATCGACTTTTATGAAGATCTTAAGTGGCGCCCTCGCCCCAA
CCTCGGGCAACGTGTCGATCACGCCGGGCTTAAAGGTCGGCACCCTAAGCCAAGATCAATTCGCCTTCGAGCAATACACG
GTTATCGATGCGGTGATCATGGGCGATACCCAGCTGTGGAAAATCAAGCAAGAGCGTGACGCGATTTATGCCAAACCCGA
TATGACCGAAGAAGACGGCATGCGTGTGGGCGATCTTGAGAGTGAATTTGCCGAGATGGACGGCTACAGCGCCGAGAGCC
GCGCGGGCGAAATTCTGATTGAAGCCGGTATCGAAGAATCCTTCCACTATGGCCCAATGTCACAGGTCGCCCCCGGTTGG
AAACTGCGCGTGCTGTTAGCCCAAGCACTGTTTGCGAACCCCGATATATTGCTGCTCGACGAGCCCACCAACAACTTGGA
TATTCACACCATCAGTTGGCTCGAAACTGAGCTGAATAAGCGCAAATGCACCATGATCATTATTTCCCACGACAGACACT
TCTTAAATGCTGTCTGTACCCATATGGCGGATATCGATTACGGTGAGCTGCGGATTTACCCTGGCAACTACGAATACTTC
CTTGAGCAATCGGCGCTGCAGCGCGAACAATTGCTGTCGAGCAACGCCAAAAAGAGCGCTGAAATTGAAGAGCTGCAAGA
CTTCGTTAACCGATTCGGTGCTAACGCCTCTAAGGCAAAACTCGCCAGTTCACGCGCCAAGCGCATGGACAAAATTAAGT
TGGATGAAGTCAAATCCTCCAGCCGTATCGCGCCGTCAATCCGCTTCGCGCCAGGCAAGAAGATGCACCGTCAGGCATTG
GTGCTTGAGAACCTCGCCCACGGTTTTGACGGCGAATTGCTATTCGAAGGCGGCGATTTAATCCTCGAAGCCGGCGCAAA
GCTTGCGATTATCGGTGAGAACGGTGTCGGCAAAACGACCTTATTACGCTGTTTAGTCAATGAGTTAATCCATAATCAAG
GCGTGATTAAGTGGTCTGAAAACGCTTCCATTGGTTACTGCCCACAGGACAGCACCAGCGATTTTGATAATGATTTGACT
ATTATTGAATGGATGGACCAATGGCGTCAGCCAAAACACAACGATTTGATGGTGCGTGCCATGTTAGGTCGTTTGCTGTT
TACCGAAGATGATGCCAACAAAAAAGCCAAAAACTGCTCAGGTGGTGAGAAAAACCGTTTAATTTTCGGCAAGTTAATGA
TGCAAGATATCAACGTCATCATTATGGACGAACCGACCAACCATATGGATATGGAAGCGATTGAATCCTTAAATAATGCC
CTCAAAGATTTTGAAGGCACATTGATTTTCGTTAGCCACGACCGCGAATTTGTGTCCTCGTTAGCAACCCGCATTATCGA
TATTCGCGATAGAAAATTAGTCAACTTCCAAGGGACCTTTGATGAGTATTTGGCAAACCTTGCCAGTGCCTAA

Upstream 100 bases:

>100_bases
GCCCAAATCATTTGGCCAATAACTAGCTCGATATTGCAATACTGTTTGCGGTTGCCAGCTTTTTAAGCCGTTATTAACGA
CTTTTTCCTAGGACATACCC

Downstream 100 bases:

>100_bases
TCGCCAACGGCTTTTGCAAAAGCGCTTTTGATAAACGCCCTTTTGCTAAAGGACTTCAAAAGACCCAAAGAAAAGACGCT
TCACTCTACTCGAGCTTAGC

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 530; Mature: 530

Protein sequence:

>530_residues
MISTANITMQFGPEPLFENISAKFGNGNRYGLIGANGCGKSTFMKILSGALAPTSGNVSITPGLKVGTLSQDQFAFEQYT
VIDAVIMGDTQLWKIKQERDAIYAKPDMTEEDGMRVGDLESEFAEMDGYSAESRAGEILIEAGIEESFHYGPMSQVAPGW
KLRVLLAQALFANPDILLLDEPTNNLDIHTISWLETELNKRKCTMIIISHDRHFLNAVCTHMADIDYGELRIYPGNYEYF
LEQSALQREQLLSSNAKKSAEIEELQDFVNRFGANASKAKLASSRAKRMDKIKLDEVKSSSRIAPSIRFAPGKKMHRQAL
VLENLAHGFDGELLFEGGDLILEAGAKLAIIGENGVGKTTLLRCLVNELIHNQGVIKWSENASIGYCPQDSTSDFDNDLT
IIEWMDQWRQPKHNDLMVRAMLGRLLFTEDDANKKAKNCSGGEKNRLIFGKLMMQDINVIIMDEPTNHMDMEAIESLNNA
LKDFEGTLIFVSHDREFVSSLATRIIDIRDRKLVNFQGTFDEYLANLASA

Sequences:

>Translated_530_residues
MISTANITMQFGPEPLFENISAKFGNGNRYGLIGANGCGKSTFMKILSGALAPTSGNVSITPGLKVGTLSQDQFAFEQYT
VIDAVIMGDTQLWKIKQERDAIYAKPDMTEEDGMRVGDLESEFAEMDGYSAESRAGEILIEAGIEESFHYGPMSQVAPGW
KLRVLLAQALFANPDILLLDEPTNNLDIHTISWLETELNKRKCTMIIISHDRHFLNAVCTHMADIDYGELRIYPGNYEYF
LEQSALQREQLLSSNAKKSAEIEELQDFVNRFGANASKAKLASSRAKRMDKIKLDEVKSSSRIAPSIRFAPGKKMHRQAL
VLENLAHGFDGELLFEGGDLILEAGAKLAIIGENGVGKTTLLRCLVNELIHNQGVIKWSENASIGYCPQDSTSDFDNDLT
IIEWMDQWRQPKHNDLMVRAMLGRLLFTEDDANKKAKNCSGGEKNRLIFGKLMMQDINVIIMDEPTNHMDMEAIESLNNA
LKDFEGTLIFVSHDREFVSSLATRIIDIRDRKLVNFQGTFDEYLANLASA
>Mature_530_residues
MISTANITMQFGPEPLFENISAKFGNGNRYGLIGANGCGKSTFMKILSGALAPTSGNVSITPGLKVGTLSQDQFAFEQYT
VIDAVIMGDTQLWKIKQERDAIYAKPDMTEEDGMRVGDLESEFAEMDGYSAESRAGEILIEAGIEESFHYGPMSQVAPGW
KLRVLLAQALFANPDILLLDEPTNNLDIHTISWLETELNKRKCTMIIISHDRHFLNAVCTHMADIDYGELRIYPGNYEYF
LEQSALQREQLLSSNAKKSAEIEELQDFVNRFGANASKAKLASSRAKRMDKIKLDEVKSSSRIAPSIRFAPGKKMHRQAL
VLENLAHGFDGELLFEGGDLILEAGAKLAIIGENGVGKTTLLRCLVNELIHNQGVIKWSENASIGYCPQDSTSDFDNDLT
IIEWMDQWRQPKHNDLMVRAMLGRLLFTEDDANKKAKNCSGGEKNRLIFGKLMMQDINVIIMDEPTNHMDMEAIESLNNA
LKDFEGTLIFVSHDREFVSSLATRIIDIRDRKLVNFQGTFDEYLANLASA

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=535, Percent_Identity=30.0934579439252, Blast_Score=252, Evalue=5e-67,
Organism=Homo sapiens, GI10947137, Length=534, Percent_Identity=28.8389513108614, Blast_Score=228, Evalue=1e-59,
Organism=Homo sapiens, GI27881506, Length=534, Percent_Identity=28.8389513108614, Blast_Score=228, Evalue=1e-59,
Organism=Homo sapiens, GI69354671, Length=523, Percent_Identity=27.7246653919694, Blast_Score=201, Evalue=1e-51,
Organism=Homo sapiens, GI10947135, Length=523, Percent_Identity=27.7246653919694, Blast_Score=201, Evalue=2e-51,
Organism=Escherichia coli, GI1787041, Length=524, Percent_Identity=64.6946564885496, Blast_Score=723, Evalue=0.0,
Organism=Escherichia coli, GI1789751, Length=531, Percent_Identity=30.6967984934087, Blast_Score=271, Evalue=1e-73,
Organism=Escherichia coli, GI2367384, Length=519, Percent_Identity=30.8285163776493, Blast_Score=231, Evalue=8e-62,
Organism=Escherichia coli, GI1787182, Length=513, Percent_Identity=30.9941520467836, Blast_Score=221, Evalue=1e-58,
Organism=Escherichia coli, GI1787029, Length=257, Percent_Identity=28.4046692607004, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788165, Length=185, Percent_Identity=27.027027027027, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1786398, Length=248, Percent_Identity=28.2258064516129, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1789032, Length=216, Percent_Identity=28.7037037037037, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1788450, Length=249, Percent_Identity=24.4979919678715, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787105, Length=236, Percent_Identity=27.1186440677966, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1790525, Length=233, Percent_Identity=23.6051502145923, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787370, Length=223, Percent_Identity=24.2152466367713, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=536, Percent_Identity=30.9701492537313, Blast_Score=240, Evalue=1e-63,
Organism=Caenorhabditis elegans, GI17555318, Length=533, Percent_Identity=29.2682926829268, Blast_Score=238, Evalue=8e-63,
Organism=Caenorhabditis elegans, GI17559834, Length=529, Percent_Identity=26.6540642722117, Blast_Score=219, Evalue=2e-57,
Organism=Saccharomyces cerevisiae, GI6320874, Length=544, Percent_Identity=29.7794117647059, Blast_Score=246, Evalue=8e-66,
Organism=Saccharomyces cerevisiae, GI6321121, Length=527, Percent_Identity=29.0322580645161, Blast_Score=226, Evalue=6e-60,
Organism=Saccharomyces cerevisiae, GI6323278, Length=413, Percent_Identity=25.4237288135593, Blast_Score=130, Evalue=5e-31,
Organism=Saccharomyces cerevisiae, GI6324314, Length=413, Percent_Identity=25.6658595641646, Blast_Score=123, Evalue=7e-29,
Organism=Saccharomyces cerevisiae, GI6325030, Length=420, Percent_Identity=26.4285714285714, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24666836, Length=532, Percent_Identity=29.5112781954887, Blast_Score=251, Evalue=1e-66,
Organism=Drosophila melanogaster, GI24642252, Length=538, Percent_Identity=29.182156133829, Blast_Score=238, Evalue=6e-63,
Organism=Drosophila melanogaster, GI18859989, Length=538, Percent_Identity=29.182156133829, Blast_Score=238, Evalue=6e-63,
Organism=Drosophila melanogaster, GI24641342, Length=537, Percent_Identity=29.608938547486, Blast_Score=234, Evalue=1e-61,
Organism=Drosophila melanogaster, GI221500365, Length=185, Percent_Identity=27.027027027027, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007184, Length=185, Percent_Identity=27.027027027027, Blast_Score=68, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 59159; Mature: 59159

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISTANITMQFGPEPLFENISAKFGNGNRYGLIGANGCGKSTFMKILSGALAPTSGNVSI
CCCEEEEEEEECCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEE
TPGLKVGTLSQDQFAFEQYTVIDAVIMGDTQLWKIKQERDAIYAKPDMTEEDGMRVGDLE
CCCCEEECCCCCHHHHHHHEEEEEEEECCCCEEEEEHHCCCEEECCCCCHHCCCEECCHH
SEFAEMDGYSAESRAGEILIEAGIEESFHYGPMSQVAPGWKLRVLLAQALFANPDILLLD
HHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEE
EPTNNLDIHTISWLETELNKRKCTMIIISHDRHFLNAVCTHMADIDYGELRIYPGNYEYF
CCCCCCEEEEEHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHCCCCCCEEEEECCCHHHH
LEQSALQREQLLSSNAKKSAEIEELQDFVNRFGANASKAKLASSRAKRMDKIKLDEVKSS
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCC
SRIAPSIRFAPGKKMHRQALVLENLAHGFDGELLFEGGDLILEAGAKLAIIGENGVGKTT
CCCCCCEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCCEEEEEECCCCCHHH
LLRCLVNELIHNQGVIKWSENASIGYCPQDSTSDFDNDLTIIEWMDQWRQPKHNDLMVRA
HHHHHHHHHHHCCCCEEECCCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
MLGRLLFTEDDANKKAKNCSGGEKNRLIFGKLMMQDINVIIMDEPTNHMDMEAIESLNNA
HHHHHEECCCCCCCHHCCCCCCCCCCEEEHEEHHCCCCEEEEECCCCCCCHHHHHHHHHH
LKDFEGTLIFVSHDREFVSSLATRIIDIRDRKLVNFQGTFDEYLANLASA
HHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCC
>Mature Secondary Structure
MISTANITMQFGPEPLFENISAKFGNGNRYGLIGANGCGKSTFMKILSGALAPTSGNVSI
CCCEEEEEEEECCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEE
TPGLKVGTLSQDQFAFEQYTVIDAVIMGDTQLWKIKQERDAIYAKPDMTEEDGMRVGDLE
CCCCEEECCCCCHHHHHHHEEEEEEEECCCCEEEEEHHCCCEEECCCCCHHCCCEECCHH
SEFAEMDGYSAESRAGEILIEAGIEESFHYGPMSQVAPGWKLRVLLAQALFANPDILLLD
HHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEE
EPTNNLDIHTISWLETELNKRKCTMIIISHDRHFLNAVCTHMADIDYGELRIYPGNYEYF
CCCCCCEEEEEHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHCCCCCCEEEEECCCHHHH
LEQSALQREQLLSSNAKKSAEIEELQDFVNRFGANASKAKLASSRAKRMDKIKLDEVKSS
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCC
SRIAPSIRFAPGKKMHRQALVLENLAHGFDGELLFEGGDLILEAGAKLAIIGENGVGKTT
CCCCCCEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCCEEEEEECCCCCHHH
LLRCLVNELIHNQGVIKWSENASIGYCPQDSTSDFDNDLTIIEWMDQWRQPKHNDLMVRA
HHHHHHHHHHHCCCCEEECCCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
MLGRLLFTEDDANKKAKNCSGGEKNRLIFGKLMMQDINVIIMDEPTNHMDMEAIESLNNA
HHHHHEECCCCCCCHHCCCCCCCCCCEEEHEEHHCCCCEEEEECCCCCCCHHHHHHHHHH
LKDFEGTLIFVSHDREFVSSLATRIIDIRDRKLVNFQGTFDEYLANLASA
HHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]