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The map label for this gene is ybfE [H]

Identifier: 117920582

GI number: 117920582

Start: 2563415

End: 2563687

Strand: Direct

Name: ybfE [H]

Synonym: Shewana3_2138

Alternate gene names: 117920582

Gene position: 2563415-2563687 (Clockwise)

Preceding gene: 117920581

Following gene: 117920583

Centisome position: 51.55

GC content: 44.32

Gene sequence:

>273_bases
ATGGCAAAAGAAGCAACAGATAGAACAACCATTGACCTTTTTGCCAATGAAAAGCGCCGGGGCCGCCCACGTAGCAATCC
TTTGTCCCGTAGCCAGCAACTTAAGGTCAATAAGCGCAACCAGATCCAGCGGGATAAAGCCAAAGGATTAAAGCGAATAG
AGTTAAAGGTGTCACAAGATTTATATGACGCCTTGAATGAGCAGGCATTGGCCAGTAACATCAGCCGAAGCCAGTTAATC
GAATTAATTCTTCAGCAAAAAATAGAATGCTGA

Upstream 100 bases:

>100_bases
TTGTGTGGTTAGTGTTATTTCTCGGCTGCGCCGGGTTTATTGCAAAAGGTATTATCCAGATGTCCTGGGAAGGTTCAGGC
ATCGGTTAAACAATAAGAAC

Downstream 100 bases:

>100_bases
GCAATCGATAGCAGCAAGATTAACGTATAAGTGAACTAGACATAAAGGATAGACAATGGCAACTGTAGGTCTTTTTTTCG
GTAGCGACACAGGCAACACC

Product: LexA regulated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 89

Protein sequence:

>90_residues
MAKEATDRTTIDLFANEKRRGRPRSNPLSRSQQLKVNKRNQIQRDKAKGLKRIELKVSQDLYDALNEQALASNISRSQLI
ELILQQKIEC

Sequences:

>Translated_90_residues
MAKEATDRTTIDLFANEKRRGRPRSNPLSRSQQLKVNKRNQIQRDKAKGLKRIELKVSQDLYDALNEQALASNISRSQLI
ELILQQKIEC
>Mature_89_residues
AKEATDRTTIDLFANEKRRGRPRSNPLSRSQQLKVNKRNQIQRDKAKGLKRIELKVSQDLYDALNEQALASNISRSQLIE
LILQQKIEC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081770, Length=88, Percent_Identity=61.3636363636364, Blast_Score=116, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002145 [H]

Pfam domain/function: PF01402 RHH_1 [H]

EC number: NA

Molecular weight: Translated: 10420; Mature: 10289

Theoretical pI: Translated: 10.88; Mature: 10.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEATDRTTIDLFANEKRRGRPRSNPLSRSQQLKVNKRNQIQRDKAKGLKRIELKVSQD
CCCCCCCCCCHHHCCCCHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHH
LYDALNEQALASNISRSQLIELILQQKIEC
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKEATDRTTIDLFANEKRRGRPRSNPLSRSQQLKVNKRNQIQRDKAKGLKRIELKVSQD
CCCCCCCCCHHHCCCCHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHH
LYDALNEQALASNISRSQLIELILQQKIEC
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]