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The map label for this gene is sodC [H]

Identifier: 117920569

GI number: 117920569

Start: 2550566

End: 2551078

Strand: Reverse

Name: sodC [H]

Synonym: Shewana3_2125

Alternate gene names: 117920569

Gene position: 2551078-2550566 (Counterclockwise)

Preceding gene: 117920570

Following gene: 117920566

Centisome position: 51.31

GC content: 52.24

Gene sequence:

>513_bases
ATGAAAAACATCGTGTTACTGCTTGCATCAATGTCTGCTGCCTGTGCATTTGCAGACGTGAGTGTGCCAATGAATCTTGT
CAACGAAAAGGGCGTGGGTGAAAGTGTCGGTCAAGTGACCATTTCTGAGTCGCAGTATGGAGTGGTATTTACGCCATCAC
TCAAAGGCTTAATGCCGGGATTACATGGTTTCCATCTACATGAGAACGGCAGCTGTGATCCAAAGGAAAAGGACGGAAAA
ATCGTCCCTGCTGGCGCGGCAGGTGGACACTATGATCCTGCCGCCACGAAAGCCCATGGCACGCCATGGGGAGAAGGGCA
TTTAGGCGATCTACCACCATTGTTTGTCGATGCAGACGGTGCAGCTAGTCAGGCCGTGCTGGCACCGCGCTTAAAAATGG
GTGATCTTAAAGGCCATGCGATCATGATCCATGCCGGTGGCGACAACCATTCCGATCACCCAGCGCCTTTAGGTGGCGGC
GGTGCGCGTGTAGCCTGCGGTATTATCAATTAA

Upstream 100 bases:

>100_bases
GTGTCAACTTATTTCAGGACGAGACATAGCAAAGCGTAGGTGAGTTCACTCATTGCGCTGTGTTCATGCAATTTTGTATA
AGATAACCATGGAGAAGGGT

Downstream 100 bases:

>100_bases
TGTATCGCCACATTCAGTTGTTAGCGGCGAAATGCGAGCATTGGTAACGACAGTGGATTAATGAGCCGTGAAATCGGTAT
AAAAAAAGCCCCGCAAGAGC

Product: superoxide dismutase, copper/zinc binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MKNIVLLLASMSAACAFADVSVPMNLVNEKGVGESVGQVTISESQYGVVFTPSLKGLMPGLHGFHLHENGSCDPKEKDGK
IVPAGAAGGHYDPAATKAHGTPWGEGHLGDLPPLFVDADGAASQAVLAPRLKMGDLKGHAIMIHAGGDNHSDHPAPLGGG
GARVACGIIN

Sequences:

>Translated_170_residues
MKNIVLLLASMSAACAFADVSVPMNLVNEKGVGESVGQVTISESQYGVVFTPSLKGLMPGLHGFHLHENGSCDPKEKDGK
IVPAGAAGGHYDPAATKAHGTPWGEGHLGDLPPLFVDADGAASQAVLAPRLKMGDLKGHAIMIHAGGDNHSDHPAPLGGG
GARVACGIIN
>Mature_170_residues
MKNIVLLLASMSAACAFADVSVPMNLVNEKGVGESVGQVTISESQYGVVFTPSLKGLMPGLHGFHLHENGSCDPKEKDGK
IVPAGAAGGHYDPAATKAHGTPWGEGHLGDLPPLFVDADGAASQAVLAPRLKMGDLKGHAIMIHAGGDNHSDHPAPLGGG
GARVACGIIN

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=173, Percent_Identity=53.1791907514451, Blast_Score=177, Evalue=4e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 17243; Mature: 17243

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00087 SOD_CU_ZN_1 ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIVLLLASMSAACAFADVSVPMNLVNEKGVGESVGQVTISESQYGVVFTPSLKGLMPG
CCCEEEEEECCCCCEEEEECCCCHHHHCCCCCCCCCCEEEECCCCCCEEECCCHHHHCCC
LHGFHLHENGSCDPKEKDGKIVPAGAAGGHYDPAATKAHGTPWGEGHLGDLPPLFVDADG
CCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
AASQAVLAPRLKMGDLKGHAIMIHAGGDNHSDHPAPLGGGGARVACGIIN
CCCCEEECCCCEECCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MKNIVLLLASMSAACAFADVSVPMNLVNEKGVGESVGQVTISESQYGVVFTPSLKGLMPG
CCCEEEEEECCCCCEEEEECCCCHHHHCCCCCCCCCCEEEECCCCCCEEECCCHHHHCCC
LHGFHLHENGSCDPKEKDGKIVPAGAAGGHYDPAATKAHGTPWGEGHLGDLPPLFVDADG
CCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
AASQAVLAPRLKMGDLKGHAIMIHAGGDNHSDHPAPLGGGGARVACGIIN
CCCCEEECCCCEECCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3805055; 6884993; 3855538; 8917495; 9878406 [H]