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The map label for this gene is 117920455

Identifier: 117920455

GI number: 117920455

Start: 2397452

End: 2398720

Strand: Reverse

Name: 117920455

Synonym: Shewana3_2010

Alternate gene names: NA

Gene position: 2398720-2397452 (Counterclockwise)

Preceding gene: 117920456

Following gene: 117920454

Centisome position: 48.24

GC content: 52.8

Gene sequence:

>1269_bases
ATGGAAAGGTTAACACTCAGCCATTTGGGCCATATCGCAGGTAAATGCCATTTATCCTTACCACAAGTGACTATCAGCGC
CGCTATCTGCTTGTTAACGGCTTGCGTCACTCCCCAGCGCACGACTCAGGACCAACTCTGTCAGCAACAGGCCGGAGAAT
ATTGTCACTACTTCGGCCCGCAAACTTCGTATCTGCGTCAGGCGGACCAGCAGTTATTAACGGCGCAAGCTGAGAACGTC
AGTCTTAATCCAAGTGAAGTTCAAAGCATTAGCGCCACATTGAGCGAAACAGCCGCCCTCGATGCACAGCTCTCCGTTGG
TGATAAGTTGCGTGTAGGGATCCTTAATGGCGAGGATTTCAGTGCTGATGTGGAGATTGATGCCAACGGCCAAATCTATC
TGCCCTATTTACCGCCGATTACTGCGCAGGGATTGACTCTCTCCGTCCTGAAACAACGTATCAGTCAAACCTTAGTGAAT
GAGCAATTAATGCAAGCCAGCAGCGTGCGGGTTAATATCAGTCCCATCGCCTGGGCGCCGGTTGAAGTCACTGTACTGGG
TTCGGTATTTGAACCGGGGCAGCACTTTATCAACCAAAAGTCCGATACCGAGATTAAGGATGATGACAAGAGCCATAGCG
GCGATCAGGCAAGCGATCGCACCATAGCCGCCGCCCTTCGCGCCTCCGGAGGGGTGAGACCCGACGCCGATATCCGTCAA
GTGCGGGTGATCCGCGGTCAACAGCATTTTTTACTGGATTTATCCGGCGTGATCAGCGGTACCCAAGTGCCACGTTTTCT
CTTGAGTGCCGGCGATCAAATCTTTGTCCCAAGTTCTCGGCATTTTGAGGACAAACTGGTGCGCCCCTCGCAAATCACCG
CACCTGGGATCCGCGTGTTTATTTCTAACTTAACCCAACCAGCGAGCAGTAACTCGCAATCTGCGGTAGATACCGAAGCG
ACACGTTTTCCCTACGGCACACGTTTACTCACAGGCGCGATAGCGGCTAACTGTGTCGGCGGCGCCCAAAGCACCAACGC
CAGTCGTCATGTGTTGCTAGTGACACGCAATCCGCTCTCGGATCAAACCGATATCGTCGAGCGCTCATTGGACAGCTTAA
TCCGTGATTCTTGGCAGCCACAAATGAACCCGGTATTGCTCCCTGGAGATGGTATCGCCTGCTATGACTCTGGCGTGACC
AATGTGCGTGAGATTGCGCGCAGTCTAACCGACTTATTGGTGCCTGCAAGTTTACTCGGTTTGCTGTAG

Upstream 100 bases:

>100_bases
CACCAGATTTTCAGCATCTATGAAAATCAAGATGCAGCCATCGCGCACTTTAGTTGCCACTAGCGCATCGTACAGGGTTT
AGCTAAGAGGGAGTGACATT

Downstream 100 bases:

>100_bases
CTCGGAACAAGCGCTTGGGTGGCAGGTGATGCCACCCTTAGGATGATTCGCGAGGGAGAATTGATCATGAAAGCATCTCA
GGAAGGCTACCCTCTACTGT

Product: polysaccharide export protein

Products: NA

Alternate protein names: Cold Shock Protein; Polysaccharide Export Periplasmic Protein; Polysaccharide Export Outer Membrane Protein; Polysaccharide Biosynthesis/Export Protein

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MERLTLSHLGHIAGKCHLSLPQVTISAAICLLTACVTPQRTTQDQLCQQQAGEYCHYFGPQTSYLRQADQQLLTAQAENV
SLNPSEVQSISATLSETAALDAQLSVGDKLRVGILNGEDFSADVEIDANGQIYLPYLPPITAQGLTLSVLKQRISQTLVN
EQLMQASSVRVNISPIAWAPVEVTVLGSVFEPGQHFINQKSDTEIKDDDKSHSGDQASDRTIAAALRASGGVRPDADIRQ
VRVIRGQQHFLLDLSGVISGTQVPRFLLSAGDQIFVPSSRHFEDKLVRPSQITAPGIRVFISNLTQPASSNSQSAVDTEA
TRFPYGTRLLTGAIAANCVGGAQSTNASRHVLLVTRNPLSDQTDIVERSLDSLIRDSWQPQMNPVLLPGDGIACYDSGVT
NVREIARSLTDLLVPASLLGLL

Sequences:

>Translated_422_residues
MERLTLSHLGHIAGKCHLSLPQVTISAAICLLTACVTPQRTTQDQLCQQQAGEYCHYFGPQTSYLRQADQQLLTAQAENV
SLNPSEVQSISATLSETAALDAQLSVGDKLRVGILNGEDFSADVEIDANGQIYLPYLPPITAQGLTLSVLKQRISQTLVN
EQLMQASSVRVNISPIAWAPVEVTVLGSVFEPGQHFINQKSDTEIKDDDKSHSGDQASDRTIAAALRASGGVRPDADIRQ
VRVIRGQQHFLLDLSGVISGTQVPRFLLSAGDQIFVPSSRHFEDKLVRPSQITAPGIRVFISNLTQPASSNSQSAVDTEA
TRFPYGTRLLTGAIAANCVGGAQSTNASRHVLLVTRNPLSDQTDIVERSLDSLIRDSWQPQMNPVLLPGDGIACYDSGVT
NVREIARSLTDLLVPASLLGLL
>Mature_422_residues
MERLTLSHLGHIAGKCHLSLPQVTISAAICLLTACVTPQRTTQDQLCQQQAGEYCHYFGPQTSYLRQADQQLLTAQAENV
SLNPSEVQSISATLSETAALDAQLSVGDKLRVGILNGEDFSADVEIDANGQIYLPYLPPITAQGLTLSVLKQRISQTLVN
EQLMQASSVRVNISPIAWAPVEVTVLGSVFEPGQHFINQKSDTEIKDDDKSHSGDQASDRTIAAALRASGGVRPDADIRQ
VRVIRGQQHFLLDLSGVISGTQVPRFLLSAGDQIFVPSSRHFEDKLVRPSQITAPGIRVFISNLTQPASSNSQSAVDTEA
TRFPYGTRLLTGAIAANCVGGAQSTNASRHVLLVTRNPLSDQTDIVERSLDSLIRDSWQPQMNPVLLPGDGIACYDSGVT
NVREIARSLTDLLVPASLLGLL

Specific function: Unknown

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45466; Mature: 45466

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERLTLSHLGHIAGKCHLSLPQVTISAAICLLTACVTPQRTTQDQLCQQQAGEYCHYFGP
CCCCCHHHHHHHHCEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEECCCC
QTSYLRQADQQLLTAQAENVSLNPSEVQSISATLSETAALDAQLSVGDKLRVGILNGEDF
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEECCCCEEEEEEECCCCC
SADVEIDANGQIYLPYLPPITAQGLTLSVLKQRISQTLVNEQLMQASSVRVNISPIAWAP
CEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEECCEEECC
VEVTVLGSVFEPGQHFINQKSDTEIKDDDKSHSGDQASDRTIAAALRASGGVRPDADIRQ
EEEEEECCHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHH
VRVIRGQQHFLLDLSGVISGTQVPRFLLSAGDQIFVPSSRHFEDKLVRPSQITAPGIRVF
HHHHCCCCEEEEEHHHHHCCHHHHHHHHHCCCEEECCCCCCCHHHCCCCCCCCCCHHHHH
ISNLTQPASSNSQSAVDTEATRFPYGTRLLTGAIAANCVGGAQSTNASRHVLLVTRNPLS
HHHHCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
DQTDIVERSLDSLIRDSWQPQMNPVLLPGDGIACYDSGVTNVREIARSLTDLLVPASLLG
CHHHHHHHHHHHHHHHCCCCCCCCEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
LL
CC
>Mature Secondary Structure
MERLTLSHLGHIAGKCHLSLPQVTISAAICLLTACVTPQRTTQDQLCQQQAGEYCHYFGP
CCCCCHHHHHHHHCEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEECCCC
QTSYLRQADQQLLTAQAENVSLNPSEVQSISATLSETAALDAQLSVGDKLRVGILNGEDF
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEECCCCEEEEEEECCCCC
SADVEIDANGQIYLPYLPPITAQGLTLSVLKQRISQTLVNEQLMQASSVRVNISPIAWAP
CEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEECCEEECC
VEVTVLGSVFEPGQHFINQKSDTEIKDDDKSHSGDQASDRTIAAALRASGGVRPDADIRQ
EEEEEECCHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHH
VRVIRGQQHFLLDLSGVISGTQVPRFLLSAGDQIFVPSSRHFEDKLVRPSQITAPGIRVF
HHHHCCCCEEEEEHHHHHCCHHHHHHHHHCCCEEECCCCCCCHHHCCCCCCCCCCHHHHH
ISNLTQPASSNSQSAVDTEATRFPYGTRLLTGAIAANCVGGAQSTNASRHVLLVTRNPLS
HHHHCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC
DQTDIVERSLDSLIRDSWQPQMNPVLLPGDGIACYDSGVTNVREIARSLTDLLVPASLLG
CHHHHHHHHHHHHHHHCCCCCCCCEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
LL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA