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The map label for this gene is ytfM [H]

Identifier: 117920339

GI number: 117920339

Start: 2246618

End: 2248393

Strand: Reverse

Name: ytfM [H]

Synonym: Shewana3_1894

Alternate gene names: 117920339

Gene position: 2248393-2246618 (Counterclockwise)

Preceding gene: 117920350

Following gene: 117920338

Centisome position: 45.22

GC content: 48.76

Gene sequence:

>1776_bases
ATGGCCGCCGATAACTTGTTAACGCTTTCAGTGAACGGGGTCGACGAAGCCCTAAAGCGTAATATTCTCGCCCACTTAGG
TGCTATGCCCGACTCCGAAGTGCAGCGCCGAGCCTTCTTATTTAACGTGGAAGACAATGTCTCCACCGCCCTCGAGTCCA
TGGGCTATTACCATGGCGAAGTGGAAGAACAGTTAGTCGAAAAAGAAAAAGGCCCATGGGAATTAAAGCTCACGGTCAAA
GCGGGCGAACCGGTAAAGATCCAATGGGTTGATATTAATTTTTCCGGTGAGATGCTCGACGATCGCGCCTTCGATAAGTG
GCTTGCGGAGGTGAATATCAAGCCTGGGGATACGCTCAACCATGGGGTATATGCCGATGTGAAATCCCAACTGGTGACGC
TTGCCTTGGCGAGGGGGTATTTCGATGGCGAATTCACCGAGTCACAAATCAAAATCAACCGCGATTTAAACACGGCGCAA
ATTAGCCTGCATTTTAATTCAGGCGCACGTTACCGTTTTGGACAAGTAAGCTTTGAGGGACACACCTTAGAGCCGGATAT
TCTCACTAAACTTATCCCTTTCAAAGAAGATGCGGCCTATTCGACCCGTCGGGTCAGCTCTCTAAACCGCCAATTGTTGG
ATACGGGCTATTTCGCCAATATCAAGGTCATACCGCAGATAGATCAGGCAAAGGATAACCAGTTGCCCGTCAAGGTGGAG
CTCACCAATAAGGCCAGCCACTCGATTGAATTAGGTCTCGGTGGCGACATAGGTCAAAGCGCAGATAAAACCTTCGATCC
GCGAGTACGGGTCACTTGGCGTACGCCACAAATCAATAAATACGGTCACTCCCAAGAAACCAGTTTGGAGTGGTCGCCTG
ACAGGCCTAAGTTTTTAACCACTTATACGATTCCGCTGACTCATCCCTTAGACGATCAACTCAAAATTCGCCTAGGCTTG
CTGCGGGATAAATACGGGGTGACCCAGATTTACGAGCCCGAGAACCGCGATTTTCGTAACACGGGACAACTGGAATCGAC
TAAGTATTTGCTCGGACTACTCAGGCAGCAACGCTTGGATAATCAATGGCTGATGACCTATTCCCTCGATGCGATTCGCG
AGGAATATACTCAGTCCGATACCGATTACAGCCCCAGTTTTTATCTGGCGGGGATTAACTTTTCTAAAACGACCCGTGGG
GATAACTCACTCGATCCTAAGTCTGGTTTCAGGCAAATGTATAGCTTAGATTATGCCGATCCTTATCTTGGCTCCGAGAC
ACGCCTTGCCCGCTTACAGGCCAAGTTTAAGTGGATTGACACCTTTTTTGATAACCACAGAATCGTGGCGCGTATGGATC
TCGCCGCCAACTTAGCCAATGAAAATGAGCTGGCCTTTATTCCACCATCACTGCGCTATTTTGCCGGTGGCGACCAAACC
ATACGTGGTTATGGCTATCAAGAACTTGGGCCTTATCTCGATTACATCGATGCCGATGGCAAAGTCAATCGTGAAGTTAT
CGGTGGTCGTTATCTCATGGTTGGCAGTTTGGAATATCAATATTACGTCACCCCGACTTGGCGTGTTGCCACCTTTGTGG
ATGCGGGTAACGCCTTTGATAACAATCAGTTTGAACCCGTAGTCTCAGTGGGTGGTGGTATCCATTGGATCTCCCCCATT
GGCCCAATTAAGTTAGATTTAGGGGTTGGTTTGAAAGAGACAGACACCATTGACCGTTCATGGCGCATTCACTTAACCAT
GGGGACAGAGCTATGA

Upstream 100 bases:

>100_bases
ACATCACAGGGATTATAAAGTGCAGCGATACTTGCAAATAACGTCATTATCTTTTCGTCTTCATTTGCTACTTGGCCTGA
GTTTAGTGACATCGGGGGCG

Downstream 100 bases:

>100_bases
GCAAGCCCCCTATTCATGAGCCTAATGCAACGGCTCAACAAGAGAATCAAATCCCTGAGCAATTGTCTTTGGAACAAAAT
CCAACGTGTGTGCAGCCCAA

Product: surface antigen (D15)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 591; Mature: 590

Protein sequence:

>591_residues
MAADNLLTLSVNGVDEALKRNILAHLGAMPDSEVQRRAFLFNVEDNVSTALESMGYYHGEVEEQLVEKEKGPWELKLTVK
AGEPVKIQWVDINFSGEMLDDRAFDKWLAEVNIKPGDTLNHGVYADVKSQLVTLALARGYFDGEFTESQIKINRDLNTAQ
ISLHFNSGARYRFGQVSFEGHTLEPDILTKLIPFKEDAAYSTRRVSSLNRQLLDTGYFANIKVIPQIDQAKDNQLPVKVE
LTNKASHSIELGLGGDIGQSADKTFDPRVRVTWRTPQINKYGHSQETSLEWSPDRPKFLTTYTIPLTHPLDDQLKIRLGL
LRDKYGVTQIYEPENRDFRNTGQLESTKYLLGLLRQQRLDNQWLMTYSLDAIREEYTQSDTDYSPSFYLAGINFSKTTRG
DNSLDPKSGFRQMYSLDYADPYLGSETRLARLQAKFKWIDTFFDNHRIVARMDLAANLANENELAFIPPSLRYFAGGDQT
IRGYGYQELGPYLDYIDADGKVNREVIGGRYLMVGSLEYQYYVTPTWRVATFVDAGNAFDNNQFEPVVSVGGGIHWISPI
GPIKLDLGVGLKETDTIDRSWRIHLTMGTEL

Sequences:

>Translated_591_residues
MAADNLLTLSVNGVDEALKRNILAHLGAMPDSEVQRRAFLFNVEDNVSTALESMGYYHGEVEEQLVEKEKGPWELKLTVK
AGEPVKIQWVDINFSGEMLDDRAFDKWLAEVNIKPGDTLNHGVYADVKSQLVTLALARGYFDGEFTESQIKINRDLNTAQ
ISLHFNSGARYRFGQVSFEGHTLEPDILTKLIPFKEDAAYSTRRVSSLNRQLLDTGYFANIKVIPQIDQAKDNQLPVKVE
LTNKASHSIELGLGGDIGQSADKTFDPRVRVTWRTPQINKYGHSQETSLEWSPDRPKFLTTYTIPLTHPLDDQLKIRLGL
LRDKYGVTQIYEPENRDFRNTGQLESTKYLLGLLRQQRLDNQWLMTYSLDAIREEYTQSDTDYSPSFYLAGINFSKTTRG
DNSLDPKSGFRQMYSLDYADPYLGSETRLARLQAKFKWIDTFFDNHRIVARMDLAANLANENELAFIPPSLRYFAGGDQT
IRGYGYQELGPYLDYIDADGKVNREVIGGRYLMVGSLEYQYYVTPTWRVATFVDAGNAFDNNQFEPVVSVGGGIHWISPI
GPIKLDLGVGLKETDTIDRSWRIHLTMGTEL
>Mature_590_residues
AADNLLTLSVNGVDEALKRNILAHLGAMPDSEVQRRAFLFNVEDNVSTALESMGYYHGEVEEQLVEKEKGPWELKLTVKA
GEPVKIQWVDINFSGEMLDDRAFDKWLAEVNIKPGDTLNHGVYADVKSQLVTLALARGYFDGEFTESQIKINRDLNTAQI
SLHFNSGARYRFGQVSFEGHTLEPDILTKLIPFKEDAAYSTRRVSSLNRQLLDTGYFANIKVIPQIDQAKDNQLPVKVEL
TNKASHSIELGLGGDIGQSADKTFDPRVRVTWRTPQINKYGHSQETSLEWSPDRPKFLTTYTIPLTHPLDDQLKIRLGLL
RDKYGVTQIYEPENRDFRNTGQLESTKYLLGLLRQQRLDNQWLMTYSLDAIREEYTQSDTDYSPSFYLAGINFSKTTRGD
NSLDPKSGFRQMYSLDYADPYLGSETRLARLQAKFKWIDTFFDNHRIVARMDLAANLANENELAFIPPSLRYFAGGDQTI
RGYGYQELGPYLDYIDADGKVNREVIGGRYLMVGSLEYQYYVTPTWRVATFVDAGNAFDNNQFEPVVSVGGGIHWISPIG
PIKLDLGVGLKETDTIDRSWRIHLTMGTEL

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=590, Percent_Identity=34.0677966101695, Blast_Score=294, Evalue=1e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 67089; Mature: 66958

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAADNLLTLSVNGVDEALKRNILAHLGAMPDSEVQRRAFLFNVEDNVSTALESMGYYHGE
CCCCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHCCEEEEEECCCCHHHHHHHCCCCCCH
VEEQLVEKEKGPWELKLTVKAGEPVKIQWVDINFSGEMLDDRAFDKWLAEVNIKPGDTLN
HHHHHHHHCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCHHHHHHHHHEEECCCCCCCC
HGVYADVKSQLVTLALARGYFDGEFTESQIKINRDLNTAQISLHFNSGARYRFGQVSFEG
CCEEHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCEEEEEEEECC
HTLEPDILTKLIPFKEDAAYSTRRVSSLNRQLLDTGYFANIKVIPQIDQAKDNQLPVKVE
CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCEEEE
LTNKASHSIELGLGGDIGQSADKTFDPRVRVTWRTPQINKYGHSQETSLEWSPDRPKFLT
ECCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCEEE
TYTIPLTHPLDDQLKIRLGLLRDKYGVTQIYEPENRDFRNTGQLESTKYLLGLLRQQRLD
EEEEEECCCCCCCEEEEEEEEECCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
NQWLMTYSLDAIREEYTQSDTDYSPSFYLAGINFSKTTRGDNSLDPKSGFRQMYSLDYAD
CCEEEEEEHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCC
PYLGSETRLARLQAKFKWIDTFFDNHRIVARMDLAANLANENELAFIPPSLRYFAGGDQT
CCCCCCHHHHHHHHHHHHEEHHHCCCEEEEEEEHHHHCCCCCCEEEECCCCEEECCCCCE
IRGYGYQELGPYLDYIDADGKVNREVIGGRYLMVGSLEYQYYVTPTWRVATFVDAGNAFD
EECCCHHHHCCHHEEECCCCCCCCEEECCEEEEEEEEEEEEEECCCEEEEEEEECCCCCC
NNQFEPVVSVGGGIHWISPIGPIKLDLGVGLKETDTIDRSWRIHLTMGTEL
CCCCCEEEECCCCEEEECCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCC
>Mature Secondary Structure 
AADNLLTLSVNGVDEALKRNILAHLGAMPDSEVQRRAFLFNVEDNVSTALESMGYYHGE
CCCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHCCEEEEEECCCCHHHHHHHCCCCCCH
VEEQLVEKEKGPWELKLTVKAGEPVKIQWVDINFSGEMLDDRAFDKWLAEVNIKPGDTLN
HHHHHHHHCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCHHHHHHHHHEEECCCCCCCC
HGVYADVKSQLVTLALARGYFDGEFTESQIKINRDLNTAQISLHFNSGARYRFGQVSFEG
CCEEHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCEEEEEEEECC
HTLEPDILTKLIPFKEDAAYSTRRVSSLNRQLLDTGYFANIKVIPQIDQAKDNQLPVKVE
CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCEEEE
LTNKASHSIELGLGGDIGQSADKTFDPRVRVTWRTPQINKYGHSQETSLEWSPDRPKFLT
ECCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCEEE
TYTIPLTHPLDDQLKIRLGLLRDKYGVTQIYEPENRDFRNTGQLESTKYLLGLLRQQRLD
EEEEEECCCCCCCEEEEEEEEECCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
NQWLMTYSLDAIREEYTQSDTDYSPSFYLAGINFSKTTRGDNSLDPKSGFRQMYSLDYAD
CCEEEEEEHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCC
PYLGSETRLARLQAKFKWIDTFFDNHRIVARMDLAANLANENELAFIPPSLRYFAGGDQT
CCCCCCHHHHHHHHHHHHEEHHHCCCEEEEEEEHHHHCCCCCCEEEECCCCEEECCCCCE
IRGYGYQELGPYLDYIDADGKVNREVIGGRYLMVGSLEYQYYVTPTWRVATFVDAGNAFD
EECCCHHHHCCHHEEECCCCCCCCEEECCEEEEEEEEEEEEEECCCEEEEEEEECCCCCC
NNQFEPVVSVGGGIHWISPIGPIKLDLGVGLKETDTIDRSWRIHLTMGTEL
CCCCCEEEECCCCEEEECCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]