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The map label for this gene is ycbK [H]

Identifier: 117920335

GI number: 117920335

Start: 2240629

End: 2241177

Strand: Direct

Name: ycbK [H]

Synonym: Shewana3_1890

Alternate gene names: 117920335

Gene position: 2240629-2241177 (Clockwise)

Preceding gene: 117920334

Following gene: 117920337

Centisome position: 45.06

GC content: 50.09

Gene sequence:

>549_bases
GTGACGTTACTTTGTCCTGCCCGTAGGCAGTTGTTGTTAGGCCTCAGTGGTGTGGCATTGTGTTCTTTAATTCCTTCTAA
AGCGTTTGCAAGTCGGTCGACCAAAGGGGTTCGCGATCTCAGCCTCTACAATCGCCACACGGGCGAGCATAACAATGGCA
GTTATTGGATTGACGGCCATTACCAGAGCGAAGTGTTGAATGATTTTAGTCACTTGCTGCGGGATCATCGCCAGAATGTG
GCGGCGCCCATGGATAAACGCTTATTCGATCTGCTTTACACCCTCAAGAGCACCCTCAATACGGAGAATGAGATCCATGT
GATTTCTGGTTATCGTTCGCCCAAGACTAACGCCATGTTGGCGGGTAAGAGCAGTGGGGTGGCAAAGAAAAGTTATCACA
TGCAAGGCATGGCAATGGACATCGCTATCCCGGGTGTGAACCTAAAGACCCTTCGTGATGCGGCGTTATCGCTTAAATTA
GGAGGAGTGGGTTATTACCCTAAGTCAGGTTTTGTGCATGTTGACTGTGGCCCAGTCCGCCACTGGTAG

Upstream 100 bases:

>100_bases
TGAAATCTGAAATCTTGTGAGCCAGTCAAGGCTTGATCTGAATGGCGATTCAGTATAATTTGCGGTTTTAGTGTCCAAAA
AACGAACAAAAGGTGATGAT

Downstream 100 bases:

>100_bases
TCTTATCGTTTTGCACTGAGAGCTGCTGATAAAACTGCAGCTCGAGTGCTTGAATATCCTGCAAATAATGTTTTAACAGC
GGCAAAAAGAGTTGCCCAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MTLLCPARRQLLLGLSGVALCSLIPSKAFASRSTKGVRDLSLYNRHTGEHNNGSYWIDGHYQSEVLNDFSHLLRDHRQNV
AAPMDKRLFDLLYTLKSTLNTENEIHVISGYRSPKTNAMLAGKSSGVAKKSYHMQGMAMDIAIPGVNLKTLRDAALSLKL
GGVGYYPKSGFVHVDCGPVRHW

Sequences:

>Translated_182_residues
MTLLCPARRQLLLGLSGVALCSLIPSKAFASRSTKGVRDLSLYNRHTGEHNNGSYWIDGHYQSEVLNDFSHLLRDHRQNV
AAPMDKRLFDLLYTLKSTLNTENEIHVISGYRSPKTNAMLAGKSSGVAKKSYHMQGMAMDIAIPGVNLKTLRDAALSLKL
GGVGYYPKSGFVHVDCGPVRHW
>Mature_181_residues
TLLCPARRQLLLGLSGVALCSLIPSKAFASRSTKGVRDLSLYNRHTGEHNNGSYWIDGHYQSEVLNDFSHLLRDHRQNVA
APMDKRLFDLLYTLKSTLNTENEIHVISGYRSPKTNAMLAGKSSGVAKKSYHMQGMAMDIAIPGVNLKTLRDAALSLKLG
GVGYYPKSGFVHVDCGPVRHW

Specific function: Unknown

COG id: COG3108

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1666 [H]

Homologues:

Organism=Escherichia coli, GI1787157, Length=177, Percent_Identity=49.1525423728814, Blast_Score=167, Evalue=3e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010275
- InterPro:   IPR009045
- InterPro:   IPR006311 [H]

Pfam domain/function: PF05951 Peptidase_M15_2 [H]

EC number: NA

Molecular weight: Translated: 20126; Mature: 19995

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLLCPARRQLLLGLSGVALCSLIPSKAFASRSTKGVRDLSLYNRHTGEHNNGSYWIDGH
CCEECHHHHHHHHCCCHHHHHHHHCHHHHHCCCCCCCHHHHHHHCCCCCCCCCCEEECCC
YQSEVLNDFSHLLRDHRQNVAAPMDKRLFDLLYTLKSTLNTENEIHVISGYRSPKTNAML
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEE
AGKSSGVAKKSYHMQGMAMDIAIPGVNLKTLRDAALSLKLGGVGYYPKSGFVHVDCGPVR
ECCCCCCCHHHHCCCCEEEEEEECCCCHHHHHHHHHEEEECCEEECCCCCEEEECCCCCC
HW
CC
>Mature Secondary Structure 
TLLCPARRQLLLGLSGVALCSLIPSKAFASRSTKGVRDLSLYNRHTGEHNNGSYWIDGH
CEECHHHHHHHHCCCHHHHHHHHCHHHHHCCCCCCCHHHHHHHCCCCCCCCCCEEECCC
YQSEVLNDFSHLLRDHRQNVAAPMDKRLFDLLYTLKSTLNTENEIHVISGYRSPKTNAML
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEE
AGKSSGVAKKSYHMQGMAMDIAIPGVNLKTLRDAALSLKLGGVGYYPKSGFVHVDCGPVR
ECCCCCCCHHHHCCCCEEEEEEECCCCHHHHHHHHHEEEECCEEECCCCCEEEECCCCCC
HW
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]