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The map label for this gene is yfjY [C]

Identifier: 117920251

GI number: 117920251

Start: 2129918

End: 2130424

Strand: Reverse

Name: yfjY [C]

Synonym: Shewana3_1804

Alternate gene names: 117920251

Gene position: 2130424-2129918 (Counterclockwise)

Preceding gene: 117920257

Following gene: 117920250

Centisome position: 42.85

GC content: 49.9

Gene sequence:

>507_bases
ATGTCAACAAAAGCGACGCACGCCAAAACTAAACCAGACAACTTGATAGACCAGCCGATTAACCAGTGGCCGCAAACCGC
CGAAGAAGTCCTAGCCTCTGCCGCCAATATCATTGCCGAACGCTATGTAAAGAAGGACGCCTATACCAACCCTCAAGCCA
CTAAGGATTTTTTAACTTACAAACTGGGCGGTTATGAGCGGGAGGTGTTTGCGGTAATGCTGCTCGATAATCAGCATCAA
TTACTCGAGTTTAAAGAGTTGTTCTTTGGCACCTTAGATGCCGCCAGTGTTTATCCACGGGAAGTGGTTAAGGTGGTGTT
AGCCGTCAATGCGGCAGCGGTGATTTTTGCCCATAACCATCCCTCCGGTGAGTCTGAACCTTCGGTAGCAGATAAGCACA
TCACTCAACGGTTAACCGATGCATTAGCGCTTATCGATGTGCGCGTGCTTGACCATATCGTTGTTGGCCGCACGCCAGTG
TCCTTTGCTGAGCGCGGCTTACTCTAG

Upstream 100 bases:

>100_bases
GACCACTTCATTAATGCTTATCTATTACACTTTTTCCAAATATTTTCAGATATATATCACTCCTGTGCATAAGCCCATTA
ACGCTTTAAAGGAGCCTAAT

Downstream 100 bases:

>100_bases
CCAGCGTTTAAACCTGCCACACCTTTTTAAGGAGTCCATCATGATTGAATTTACCGACAGCTTTTCACAGGCGTGTGTCG
CTGAAGCCTGCGCAGCTTTT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MSTKATHAKTKPDNLIDQPINQWPQTAEEVLASAANIIAERYVKKDAYTNPQATKDFLTYKLGGYEREVFAVMLLDNQHQ
LLEFKELFFGTLDAASVYPREVVKVVLAVNAAAVIFAHNHPSGESEPSVADKHITQRLTDALALIDVRVLDHIVVGRTPV
SFAERGLL

Sequences:

>Translated_168_residues
MSTKATHAKTKPDNLIDQPINQWPQTAEEVLASAANIIAERYVKKDAYTNPQATKDFLTYKLGGYEREVFAVMLLDNQHQ
LLEFKELFFGTLDAASVYPREVVKVVLAVNAAAVIFAHNHPSGESEPSVADKHITQRLTDALALIDVRVLDHIVVGRTPV
SFAERGLL
>Mature_167_residues
STKATHAKTKPDNLIDQPINQWPQTAEEVLASAANIIAERYVKKDAYTNPQATKDFLTYKLGGYEREVFAVMLLDNQHQL
LEFKELFFGTLDAASVYPREVVKVVLAVNAAAVIFAHNHPSGESEPSVADKHITQRLTDALALIDVRVLDHIVVGRTPVS
FAERGLL

Specific function: Unknown

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI1788997, Length=148, Percent_Identity=49.3243243243243, Blast_Score=140, Evalue=5e-35,
Organism=Escherichia coli, GI87082300, Length=127, Percent_Identity=48.8188976377953, Blast_Score=136, Evalue=9e-34,
Organism=Escherichia coli, GI2367100, Length=123, Percent_Identity=54.4715447154472, Blast_Score=132, Evalue=1e-32,
Organism=Escherichia coli, GI1788312, Length=123, Percent_Identity=52.8455284552846, Blast_Score=130, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 18625; Mature: 18494

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTKATHAKTKPDNLIDQPINQWPQTAEEVLASAANIIAERYVKKDAYTNPQATKDFLTY
CCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
KLGGYEREVFAVMLLDNQHQLLEFKELFFGTLDAASVYPREVVKVVLAVNAAAVIFAHNH
HCCCCCHHHEEEEEECCCHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHEEEEEEECC
PSGESEPSVADKHITQRLTDALALIDVRVLDHIVVGRTPVSFAERGLL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCC
>Mature Secondary Structure 
STKATHAKTKPDNLIDQPINQWPQTAEEVLASAANIIAERYVKKDAYTNPQATKDFLTY
CCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
KLGGYEREVFAVMLLDNQHQLLEFKELFFGTLDAASVYPREVVKVVLAVNAAAVIFAHNH
HCCCCCHHHEEEEEECCCHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHEEEEEEECC
PSGESEPSVADKHITQRLTDALALIDVRVLDHIVVGRTPVSFAERGLL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]