Click here to switch to the map view.

The map label for this gene is yebR [H]

Identifier: 117920223

GI number: 117920223

Start: 2091072

End: 2091530

Strand: Direct

Name: yebR [H]

Synonym: Shewana3_1776

Alternate gene names: 117920223

Gene position: 2091072-2091530 (Clockwise)

Preceding gene: 117920222

Following gene: 117920224

Centisome position: 42.06

GC content: 49.02

Gene sequence:

>459_bases
ATGAAACCGCAATTTTATGAGTCACTGAATCGTCAAGCGCTGGCCTTACTCGAGGGCGAGGATGATTTAGTGGCTGCTAT
GGCTAACTTTTCTGCTTTGCTAAACGATAACCTAACCGAACTGAACTGGGTGGGTTTTTACGTGATGCGTGGCGAACAGC
TGGTGTTGGGTCCTTTCCAAGGTAAAGTGGCCTGTACCCGTATTCCAATGGGTAAGGGCGTGTGCGGTACCGCCGCACAA
ACCAATCAGACGCAGCGTGTCGCCGATGTGCATCAATTTGATGGCCATATCGCCTGCGACTCGGCCAGTAATTCTGAAAT
TGTTATCCCAGTCCGCGCCGATGGTAAGGTTGTGGCCGTGCTGGATATCGATAGTCCTATTTTTGACCGCTTCGATGAAG
AGGACCAAAAGGGCTTGGAATTATTGGTAAAAAGCTTCGAAAACTGCCTATTTGCTTAA

Upstream 100 bases:

>100_bases
TAAAGGCATAGTTCAAGTTAATAGTACGCCATCAAAACAAAATGCAGCGAAAAAAGCGCCTAAGAAGGACGACGCTGCCG
AATAATTTTTTAGGAAGTCT

Downstream 100 bases:

>100_bases
TTTGCGTACAATAACGCATAATTCATAGTCGCAATCGGTGGCGTGCGCCTTATAATAGCGCATGCATTGATAAGGCTTAT
TTTGAGCGCAGCCGAAATAA

Product: putative GAF sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MKPQFYESLNRQALALLEGEDDLVAAMANFSALLNDNLTELNWVGFYVMRGEQLVLGPFQGKVACTRIPMGKGVCGTAAQ
TNQTQRVADVHQFDGHIACDSASNSEIVIPVRADGKVVAVLDIDSPIFDRFDEEDQKGLELLVKSFENCLFA

Sequences:

>Translated_152_residues
MKPQFYESLNRQALALLEGEDDLVAAMANFSALLNDNLTELNWVGFYVMRGEQLVLGPFQGKVACTRIPMGKGVCGTAAQ
TNQTQRVADVHQFDGHIACDSASNSEIVIPVRADGKVVAVLDIDSPIFDRFDEEDQKGLELLVKSFENCLFA
>Mature_152_residues
MKPQFYESLNRQALALLEGEDDLVAAMANFSALLNDNLTELNWVGFYVMRGEQLVLGPFQGKVACTRIPMGKGVCGTAAQ
TNQTQRVADVHQFDGHIACDSASNSEIVIPVRADGKVVAVLDIDSPIFDRFDEEDQKGLELLVKSFENCLFA

Specific function: Unknown

COG id: COG1956

COG function: function code T; GAF domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the free Met sulfoxide reductase family [H]

Homologues:

Organism=Escherichia coli, GI171474009, Length=149, Percent_Identity=57.0469798657718, Blast_Score=188, Evalue=2e-49,
Organism=Saccharomyces cerevisiae, GI6322781, Length=159, Percent_Identity=44.0251572327044, Blast_Score=125, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003018
- InterPro:   IPR000614 [H]

Pfam domain/function: PF01590 GAF [H]

EC number: NA

Molecular weight: Translated: 16683; Mature: 16683

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: PS01320 UPF0067

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPQFYESLNRQALALLEGEDDLVAAMANFSALLNDNLTELNWVGFYVMRGEQLVLGPFQ
CCCHHHHHCCHHEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCEEEEECCC
GKVACTRIPMGKGVCGTAAQTNQTQRVADVHQFDGHIACDSASNSEIVIPVRADGKVVAV
CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEECCCCEEEE
LDIDSPIFDRFDEEDQKGLELLVKSFENCLFA
EECCCHHHHHCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKPQFYESLNRQALALLEGEDDLVAAMANFSALLNDNLTELNWVGFYVMRGEQLVLGPFQ
CCCHHHHHCCHHEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCEEEEECCC
GKVACTRIPMGKGVCGTAAQTNQTQRVADVHQFDGHIACDSASNSEIVIPVRADGKVVAV
CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEECCCCEEEE
LDIDSPIFDRFDEEDQKGLELLVKSFENCLFA
EECCCHHHHHCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 10493123 [H]