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The map label for this gene is yqhC [H]

Identifier: 117920145

GI number: 117920145

Start: 1995884

End: 1996792

Strand: Direct

Name: yqhC [H]

Synonym: Shewana3_1698

Alternate gene names: 117920145

Gene position: 1995884-1996792 (Clockwise)

Preceding gene: 117920142

Following gene: 117920146

Centisome position: 40.14

GC content: 48.95

Gene sequence:

>909_bases
ATGAGTGAGATGCAAATGATGAATGGTTTTTCTCAAGTGCTTGCCGACAATGTGGCCAAAAGAACCCTTGGCGTCGAATG
GGCATCATCTGAGGTCGAGGGGCTCGAGTTTTATCGGCAGAATGCACCCACCTCCAACTCGGTTTGTATTGTCGAGCCAA
GTATTGCGGTTGTGGTGCAAGGCGCGAAGAGTATGACCTTGGGGGAGCAGGTATTGATCTACGATCCGAGTCGATTCTTA
ATCACTTCGTTAGAACTACCCGCCACCATGCAAGTGTTAGAGGCCAGTACAGAAAAACCTTACCTCGGTGTCGTGCTAAA
ACTCGATTTGGCGGTGATGAGTGACTTAATGTTGCAAACGCCCTTAGCGAGGCAAAAGGATACGGTTACCGACCAAGGCA
TGATTTTAGGCCATTCCACCCCAAGCTTGTTGAATGCTTTCAGCCGTTTAGTTGCCTTACTCGATGAGCCTGAGTCGATT
CCTGTGCTTGCGCCTCTGATTAAAAGAGAGATTTTTTGGCGAGTGCTTATCAGTGAGCAGGGCGCGCGCTTAAGGCAAAT
CGTGTCGGCGGGCAGCCATGGTTTACGCATCGCGCATTCTATCGAGTGGCTTAAAGTGAATTTTGCCCAGCATTTTAGCA
TCGATGATTTAGCCGATATGACCCGAATGAGTAAATCGACCTTTCACCATCATTTTCGTCAATTGACCTCGATGAGTCCG
CTGCAATATCAAAAACGGTTACGCTTGATGGAGGCTCGCCGATTGATGTTAAGCGAGAGCATAGATGCTGCCGCAGCCGC
TTATCGTGTTGGTTATGAGAGTCCATCGCAATTTTCCCGCGAATACTCGCGTCTGTTTGGCAACTCCCCCAAACGAGATG
TCGATATCCACTGGTTATCATCGACCTGA

Upstream 100 bases:

>100_bases
CAATTGTTAGGCATTTCGTATGCTAACGAGTTAGGTAGCGAGTAAGATAAATTCAAATGACCGAGTGCCTACTGCTACTG
ATAAAAACGGGTGAAAACAG

Downstream 100 bases:

>100_bases
CTAAAGAAAGATACTTAGACCAACTGGTTGGGCTTAAGTGATTGGATTTAACAGGTTGGGACTAACTATTTGGAATAAGC
CGTTTGGCTTAAGCGACTGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MSEMQMMNGFSQVLADNVAKRTLGVEWASSEVEGLEFYRQNAPTSNSVCIVEPSIAVVVQGAKSMTLGEQVLIYDPSRFL
ITSLELPATMQVLEASTEKPYLGVVLKLDLAVMSDLMLQTPLARQKDTVTDQGMILGHSTPSLLNAFSRLVALLDEPESI
PVLAPLIKREIFWRVLISEQGARLRQIVSAGSHGLRIAHSIEWLKVNFAQHFSIDDLADMTRMSKSTFHHHFRQLTSMSP
LQYQKRLRLMEARRLMLSESIDAAAAAYRVGYESPSQFSREYSRLFGNSPKRDVDIHWLSST

Sequences:

>Translated_302_residues
MSEMQMMNGFSQVLADNVAKRTLGVEWASSEVEGLEFYRQNAPTSNSVCIVEPSIAVVVQGAKSMTLGEQVLIYDPSRFL
ITSLELPATMQVLEASTEKPYLGVVLKLDLAVMSDLMLQTPLARQKDTVTDQGMILGHSTPSLLNAFSRLVALLDEPESI
PVLAPLIKREIFWRVLISEQGARLRQIVSAGSHGLRIAHSIEWLKVNFAQHFSIDDLADMTRMSKSTFHHHFRQLTSMSP
LQYQKRLRLMEARRLMLSESIDAAAAAYRVGYESPSQFSREYSRLFGNSPKRDVDIHWLSST
>Mature_301_residues
SEMQMMNGFSQVLADNVAKRTLGVEWASSEVEGLEFYRQNAPTSNSVCIVEPSIAVVVQGAKSMTLGEQVLIYDPSRFLI
TSLELPATMQVLEASTEKPYLGVVLKLDLAVMSDLMLQTPLARQKDTVTDQGMILGHSTPSLLNAFSRLVALLDEPESIP
VLAPLIKREIFWRVLISEQGARLRQIVSAGSHGLRIAHSIEWLKVNFAQHFSIDDLADMTRMSKSTFHHHFRQLTSMSPL
QYQKRLRLMEARRLMLSESIDAAAAAYRVGYESPSQFSREYSRLFGNSPKRDVDIHWLSST

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=284, Percent_Identity=30.9859154929577, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1790339, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33917; Mature: 33785

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEMQMMNGFSQVLADNVAKRTLGVEWASSEVEGLEFYRQNAPTSNSVCIVEPSIAVVVQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCEEEEEE
GAKSMTLGEQVLIYDPSRFLITSLELPATMQVLEASTEKPYLGVVLKLDLAVMSDLMLQT
CCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHC
PLARQKDTVTDQGMILGHSTPSLLNAFSRLVALLDEPESIPVLAPLIKREIFWRVLISEQ
CCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
GARLRQIVSAGSHGLRIAHSIEWLKVNFAQHFSIDDLADMTRMSKSTFHHHFRQLTSMSP
CHHHHHHHHCCCCCEEEEECEEEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCH
LQYQKRLRLMEARRLMLSESIDAAAAAYRVGYESPSQFSREYSRLFGNSPKRDVDIHWLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEC
ST
CC
>Mature Secondary Structure 
SEMQMMNGFSQVLADNVAKRTLGVEWASSEVEGLEFYRQNAPTSNSVCIVEPSIAVVVQ
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCEEEEEE
GAKSMTLGEQVLIYDPSRFLITSLELPATMQVLEASTEKPYLGVVLKLDLAVMSDLMLQT
CCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHC
PLARQKDTVTDQGMILGHSTPSLLNAFSRLVALLDEPESIPVLAPLIKREIFWRVLISEQ
CCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
GARLRQIVSAGSHGLRIAHSIEWLKVNFAQHFSIDDLADMTRMSKSTFHHHFRQLTSMSP
CHHHHHHHHCCCCCEEEEECEEEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCH
LQYQKRLRLMEARRLMLSESIDAAAAAYRVGYESPSQFSREYSRLFGNSPKRDVDIHWLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEC
ST
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]