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The map label for this gene is yfgC [C]

Identifier: 117920096

GI number: 117920096

Start: 1940023

End: 1941492

Strand: Reverse

Name: yfgC [C]

Synonym: Shewana3_1649

Alternate gene names: 117920096

Gene position: 1941492-1940023 (Counterclockwise)

Preceding gene: 117920099

Following gene: 117920095

Centisome position: 39.05

GC content: 50.14

Gene sequence:

>1470_bases
TTGCGTAATTTGACGTTTTTGACCCGATGTAAACCCCTTGCGGCGAGTGTACTTTCATTAATGTTACTCGGTGGAGCCGC
AAAGAGTTTTGCCAACAACGACTTGCCCGACTTGGGCACCGCCGCCGTCAATACCTTCAGCCTAGAAAAAGAAATGGTCT
ATGGCGATGCCTACATGCGCGTTATTCGCTCATCGGCGCCGATGCTGAACGATCCGGTATTGAGCCAATATTTGACTGAA
CTGGGCAACAAACTGGTCGCCCATGCCACGGGAGTCAAAACGCCCTTTTATTTCTTCTTACTGCAAAACGATGAGATCAA
CGCCTTCGCCTTCTTCGGCGGCCACGTTGCAGTACACACAGGGCTATTCCTTAACGCCGATAACGAAAGTGAGCTGGCCT
CAGTGCTCGGCCACGAAATTACCCACGTGACCCAACGTCACTTGGCGCGCTCCCTCGAAGCGCAGCAAAAAAGTGGTCCA
GCGACCGTTGCAGGACTACTGGGGGCGATTTTATTAACCATCGCCGTGCCTCAGGCGGGGATGGCCGCGCTGGCAACCAC
TCAAGCCATGGCGACCCAATCAAAAATCAACTATACCCGTCTGCATGAAAAAGAAGCCGACCGGATTGGCATGCAGATTT
TGGTCGATGCGGGCTTTGACCCCAATGCGGCCGCAGATTTCTTTGGTAAACTCGCCAGTCGCTACCGTTTTACCACCACG
CCGCCGCAAATGTTGCTGACTCACCCATTACCCGAGTCACGGATCTCCGAGGCGCGGGATCGCGCCCACCAGTATCCACA
CCGCTATGTGCCGGATAATCTCAACTTCCAGCTCGCCAAAGCCCGTATTCAGGTGCGTTTTTCCAGTTACAGCGACGATG
CGGTATTGAGCATGTTTGAAAAGCAGCTCAATAAGCAAACCTACGGCTTTAAAGAGGCCGCGCTCTACGGCAAAGCCTTA
GCGCTGTTTAGATTGAAGAAATTTGATGAGTCCGAAAAGATTATCGATGAGCTATTAAAAATCGATGATAACAACTTGTT
TTATATCGATACTAAGACGGATTTGCTCAACGAGCGCAAGGATTTTGCTCAGGCGACTAAGTTACTCGAAGCCCAGCGTA
AGATGAAACCCACATCGCAGGTGATTAACGCGAACTTGGCCAATATCTATATTGAGGCCGGAGAGCCAGCTAAGGCTATC
CCACTGCTGGAAGACATGATTTTCCTCGATAAGCAAAATCAACTTCCCTATCAACTGCTCAATCTTGCCTATAAAAAATT
GGGCAATCAGGGCATGGAGTATTTTTCCAATGCCGAGTTAATGGCGCTAGGCGCTAACTATAAGGGCGCTATCGATCAAT
TGAACTTTGCCTACCGCGCTTCGGAAGGCAATCCATTACAGCTGGCACGAATCGAAGCACGTATCCGCCAATTTAAACAA
GCGGATAAAGAGATGGATGCCCTGAAGTAA

Upstream 100 bases:

>100_bases
ATGAATGAACTTGGGCTATTATCCTAAGTTGCAACTCAAACTACAAGCTAAGGGCTACCCTCGCCTTAGTTGAGACACTT
AAAAGAGATAAAGGATCCAC

Downstream 100 bases:

>100_bases
AATAGCCATTTTATCTCTATCCCTTATAATCGCGCCCCGAACACCCTGACGGGGCGCTGTTTTTTCTGCTATCATCCGCG
CCATTGTTTTAGCCGATTGA

Product: peptidase M48, Ste24p

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 489; Mature: 489

Protein sequence:

>489_residues
MRNLTFLTRCKPLAASVLSLMLLGGAAKSFANNDLPDLGTAAVNTFSLEKEMVYGDAYMRVIRSSAPMLNDPVLSQYLTE
LGNKLVAHATGVKTPFYFFLLQNDEINAFAFFGGHVAVHTGLFLNADNESELASVLGHEITHVTQRHLARSLEAQQKSGP
ATVAGLLGAILLTIAVPQAGMAALATTQAMATQSKINYTRLHEKEADRIGMQILVDAGFDPNAAADFFGKLASRYRFTTT
PPQMLLTHPLPESRISEARDRAHQYPHRYVPDNLNFQLAKARIQVRFSSYSDDAVLSMFEKQLNKQTYGFKEAALYGKAL
ALFRLKKFDESEKIIDELLKIDDNNLFYIDTKTDLLNERKDFAQATKLLEAQRKMKPTSQVINANLANIYIEAGEPAKAI
PLLEDMIFLDKQNQLPYQLLNLAYKKLGNQGMEYFSNAELMALGANYKGAIDQLNFAYRASEGNPLQLARIEARIRQFKQ
ADKEMDALK

Sequences:

>Translated_489_residues
MRNLTFLTRCKPLAASVLSLMLLGGAAKSFANNDLPDLGTAAVNTFSLEKEMVYGDAYMRVIRSSAPMLNDPVLSQYLTE
LGNKLVAHATGVKTPFYFFLLQNDEINAFAFFGGHVAVHTGLFLNADNESELASVLGHEITHVTQRHLARSLEAQQKSGP
ATVAGLLGAILLTIAVPQAGMAALATTQAMATQSKINYTRLHEKEADRIGMQILVDAGFDPNAAADFFGKLASRYRFTTT
PPQMLLTHPLPESRISEARDRAHQYPHRYVPDNLNFQLAKARIQVRFSSYSDDAVLSMFEKQLNKQTYGFKEAALYGKAL
ALFRLKKFDESEKIIDELLKIDDNNLFYIDTKTDLLNERKDFAQATKLLEAQRKMKPTSQVINANLANIYIEAGEPAKAI
PLLEDMIFLDKQNQLPYQLLNLAYKKLGNQGMEYFSNAELMALGANYKGAIDQLNFAYRASEGNPLQLARIEARIRQFKQ
ADKEMDALK
>Mature_489_residues
MRNLTFLTRCKPLAASVLSLMLLGGAAKSFANNDLPDLGTAAVNTFSLEKEMVYGDAYMRVIRSSAPMLNDPVLSQYLTE
LGNKLVAHATGVKTPFYFFLLQNDEINAFAFFGGHVAVHTGLFLNADNESELASVLGHEITHVTQRHLARSLEAQQKSGP
ATVAGLLGAILLTIAVPQAGMAALATTQAMATQSKINYTRLHEKEADRIGMQILVDAGFDPNAAADFFGKLASRYRFTTT
PPQMLLTHPLPESRISEARDRAHQYPHRYVPDNLNFQLAKARIQVRFSSYSDDAVLSMFEKQLNKQTYGFKEAALYGKAL
ALFRLKKFDESEKIIDELLKIDDNNLFYIDTKTDLLNERKDFAQATKLLEAQRKMKPTSQVINANLANIYIEAGEPAKAI
PLLEDMIFLDKQNQLPYQLLNLAYKKLGNQGMEYFSNAELMALGANYKGAIDQLNFAYRASEGNPLQLARIEARIRQFKQ
ADKEMDALK

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=472, Percent_Identity=44.0677966101695, Blast_Score=373, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 54520; Mature: 54520

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNLTFLTRCKPLAASVLSLMLLGGAAKSFANNDLPDLGTAAVNTFSLEKEMVYGDAYMR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VIRSSAPMLNDPVLSQYLTELGNKLVAHATGVKTPFYFFLLQNDEINAFAFFGGHVAVHT
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCEEEEEE
GLFLNADNESELASVLGHEITHVTQRHLARSLEAQQKSGPATVAGLLGAILLTIAVPQAG
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
MAALATTQAMATQSKINYTRLHEKEADRIGMQILVDAGFDPNAAADFFGKLASRYRFTTT
HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCC
PPQMLLTHPLPESRISEARDRAHQYPHRYVPDNLNFQLAKARIQVRFSSYSDDAVLSMFE
CHHHHEECCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHH
KQLNKQTYGFKEAALYGKALALFRLKKFDESEKIIDELLKIDDNNLFYIDTKTDLLNERK
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHH
DFAQATKLLEAQRKMKPTSQVINANLANIYIEAGEPAKAIPLLEDMIFLDKQNQLPYQLL
HHHHHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHH
NLAYKKLGNQGMEYFSNAELMALGANYKGAIDQLNFAYRASEGNPLQLARIEARIRQFKQ
HHHHHHHCHHHHHHHCCCCEEEECCCCCCHHHHCCCEEECCCCCCCHHHHHHHHHHHHHH
ADKEMDALK
HHHHHHCCC
>Mature Secondary Structure
MRNLTFLTRCKPLAASVLSLMLLGGAAKSFANNDLPDLGTAAVNTFSLEKEMVYGDAYMR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VIRSSAPMLNDPVLSQYLTELGNKLVAHATGVKTPFYFFLLQNDEINAFAFFGGHVAVHT
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCEEEEEE
GLFLNADNESELASVLGHEITHVTQRHLARSLEAQQKSGPATVAGLLGAILLTIAVPQAG
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
MAALATTQAMATQSKINYTRLHEKEADRIGMQILVDAGFDPNAAADFFGKLASRYRFTTT
HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCC
PPQMLLTHPLPESRISEARDRAHQYPHRYVPDNLNFQLAKARIQVRFSSYSDDAVLSMFE
CHHHHEECCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHH
KQLNKQTYGFKEAALYGKALALFRLKKFDESEKIIDELLKIDDNNLFYIDTKTDLLNERK
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHH
DFAQATKLLEAQRKMKPTSQVINANLANIYIEAGEPAKAIPLLEDMIFLDKQNQLPYQLL
HHHHHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHH
NLAYKKLGNQGMEYFSNAELMALGANYKGAIDQLNFAYRASEGNPLQLARIEARIRQFKQ
HHHHHHHCHHHHHHHCCCCEEEECCCCCCHHHHCCCEEECCCCCCCHHHHHHHHHHHHHH
ADKEMDALK
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]