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The map label for this gene is ycbZ [C]

Identifier: 117920055

GI number: 117920055

Start: 1885809

End: 1887557

Strand: Reverse

Name: ycbZ [C]

Synonym: Shewana3_1607

Alternate gene names: 117920055

Gene position: 1887557-1885809 (Counterclockwise)

Preceding gene: 117920062

Following gene: 117920054

Centisome position: 37.96

GC content: 48.71

Gene sequence:

>1749_bases
ATGGTAAATGCTTATATGAATTCACTCTTGATACCATCATCCTCACTCGCGCCTGAATTTAACCTTCCTACCCTGCCGCA
ATCGGCCACAGGGTTAAAAGCCCTGCTTTTAGGGCAAGAACGTGTATTGGATGCCTTTAAGTTACATAACGCCATTGCCG
ATCAACAGCTCTACCTCGCCGATTTTCCGGGCATCGACCGACAATTAATCATGCAAGCCCTAATGGAAACCGTCGAGCCC
TTATCCAGTGCTTATTTAGTGGCGGCTCGGCCTGTAGAAAAAGCCATTCAGTTCCAATGGCAGTATGAAGCGCCGCTCGA
TAATCAAGGCGCCATTGCCGAGAAAAATGTCAGTTACCGTTACCTGAGTGGCAATATCCGCCGTGCCGATCTTCTTGGTC
GCATGGTGCAATCGGCAAATGGCAGCAAATATCAACCCGGTGCACTGGCCCAGTGCCACTATGTGTTTATCTGCGCCGAA
TCACTGTGGAAACGCGAAGGCCTGTGGGATCTGGTCATGCAAATTCTGACGCAAAAATCCTATCAGATAAGCAACCACCT
AAGCCCTATTCCGCTAAATTGTAAAATCATTCTGATTGGCGCAGGCTTAATCTACAGCCAAGTCCGCTCAGAAGACTGGC
AATTTCAGCGCCACTTTAGTTTGCTGGCAGAGCTGGCAAGTGAACTCGATCTGACCCGCTTTAAAGAAGTGCAATATGCC
AATTGGTTACAAGCCGTGGCTCAGAGTGTTGAGGTTGGTTTAGAGCAATCAAGCCTTGCGCCACTGTTTAGATACAGTTC
GAGGTTGACCGAACATCAACGCCGTTTAAGCCTATCTATGCTCGATTTCGCCCAATTAATGGCTCAGGCTAAGGTTTATC
GCGGCAAAGCCACTATCAATGCCGCCAGTGTTGAGCACGCACTCGAGCAAGCCAATTATCGCCATAACAGCTCTGAAGAA
TTTTCAGGGCAAAGTTTTGATGACAATTTCATAAATCTGCCAACTGAAGGCGCTATGGTAGGACAGATTAATGGCCTGAC
GGTGATCGATGCGATTGACCATAGTTATGGTGAACCCGCGCGGATCACTGCAACCGTGCATTATGGTGATGGCGAAGTAG
CGGACATTGAAAGGAAGTCCGAGCTGGGTGGCAATATCCACGCCAAGGGCATGATGATCCTTTCTGCCTGTTTGTATCGT
ATCTTTGGTCGCGATGCTCCGCTACACCTTAATGCCAACATCGTATTCGAGCAGTCCTATCAAGAGATCGATGGTGATAG
CGCCTCGCTCGCCGAGTATTGCTGTTTGATGTCGGCGATTGCCGAGCAGCCGATTATCCAGTCGCTCGCGATTACCGGCG
CCTTAGATCAATTCGGCAATGTGCAAGCCATTGGCGGCATTAATGAGAAAATTGAAGGCTTCTTTAATCTTTGTGAGCGT
CGCGGCTTAACTGGCGAACAGGGCGTGATTATGCCGAAGTCGAACGTTCTACAACTTAACCTCGCCCCAAAAGTGATAAC
AGCTGTAGGCAAAGGACAATTCCATATCTATGCGATTGAGCATATGGACGAAGCGGTGGAGCTGCTGATGCAGATGCCCG
CAGGGGTTGCCAATGAAGATAATGACTTCCCAGAAGACTCCTTATACGGCTTAGTGCAAGAACGGCTCGATAAGTTGGCA
GGAAATGGCGAGGAGGAGATTAGCTTAATGACGAGATTACTCGCAAAACTGGGATTATTTCGCCATTAA

Upstream 100 bases:

>100_bases
AGCCAACAAGTTTTCAGCAATATCTGAGTAAACCAACGCAAAAACACCTATACAGTAAGAGACTTGCTGTCTTGGTATGG
TAAAATCGCGGTAACTTTTC

Downstream 100 bases:

>100_bases
TTAGCTGATCGGAGTTGTTTAGCTTACACGTGTTCGCTAATCTTGGCGGCTCTTATTGCTGGAGTAGTAAAACAATGAAT
AAAGCAAACAGTTTCAATAA

Product: ATP-dependent protease

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 582; Mature: 582

Protein sequence:

>582_residues
MVNAYMNSLLIPSSSLAPEFNLPTLPQSATGLKALLLGQERVLDAFKLHNAIADQQLYLADFPGIDRQLIMQALMETVEP
LSSAYLVAARPVEKAIQFQWQYEAPLDNQGAIAEKNVSYRYLSGNIRRADLLGRMVQSANGSKYQPGALAQCHYVFICAE
SLWKREGLWDLVMQILTQKSYQISNHLSPIPLNCKIILIGAGLIYSQVRSEDWQFQRHFSLLAELASELDLTRFKEVQYA
NWLQAVAQSVEVGLEQSSLAPLFRYSSRLTEHQRRLSLSMLDFAQLMAQAKVYRGKATINAASVEHALEQANYRHNSSEE
FSGQSFDDNFINLPTEGAMVGQINGLTVIDAIDHSYGEPARITATVHYGDGEVADIERKSELGGNIHAKGMMILSACLYR
IFGRDAPLHLNANIVFEQSYQEIDGDSASLAEYCCLMSAIAEQPIIQSLAITGALDQFGNVQAIGGINEKIEGFFNLCER
RGLTGEQGVIMPKSNVLQLNLAPKVITAVGKGQFHIYAIEHMDEAVELLMQMPAGVANEDNDFPEDSLYGLVQERLDKLA
GNGEEEISLMTRLLAKLGLFRH

Sequences:

>Translated_582_residues
MVNAYMNSLLIPSSSLAPEFNLPTLPQSATGLKALLLGQERVLDAFKLHNAIADQQLYLADFPGIDRQLIMQALMETVEP
LSSAYLVAARPVEKAIQFQWQYEAPLDNQGAIAEKNVSYRYLSGNIRRADLLGRMVQSANGSKYQPGALAQCHYVFICAE
SLWKREGLWDLVMQILTQKSYQISNHLSPIPLNCKIILIGAGLIYSQVRSEDWQFQRHFSLLAELASELDLTRFKEVQYA
NWLQAVAQSVEVGLEQSSLAPLFRYSSRLTEHQRRLSLSMLDFAQLMAQAKVYRGKATINAASVEHALEQANYRHNSSEE
FSGQSFDDNFINLPTEGAMVGQINGLTVIDAIDHSYGEPARITATVHYGDGEVADIERKSELGGNIHAKGMMILSACLYR
IFGRDAPLHLNANIVFEQSYQEIDGDSASLAEYCCLMSAIAEQPIIQSLAITGALDQFGNVQAIGGINEKIEGFFNLCER
RGLTGEQGVIMPKSNVLQLNLAPKVITAVGKGQFHIYAIEHMDEAVELLMQMPAGVANEDNDFPEDSLYGLVQERLDKLA
GNGEEEISLMTRLLAKLGLFRH
>Mature_582_residues
MVNAYMNSLLIPSSSLAPEFNLPTLPQSATGLKALLLGQERVLDAFKLHNAIADQQLYLADFPGIDRQLIMQALMETVEP
LSSAYLVAARPVEKAIQFQWQYEAPLDNQGAIAEKNVSYRYLSGNIRRADLLGRMVQSANGSKYQPGALAQCHYVFICAE
SLWKREGLWDLVMQILTQKSYQISNHLSPIPLNCKIILIGAGLIYSQVRSEDWQFQRHFSLLAELASELDLTRFKEVQYA
NWLQAVAQSVEVGLEQSSLAPLFRYSSRLTEHQRRLSLSMLDFAQLMAQAKVYRGKATINAASVEHALEQANYRHNSSEE
FSGQSFDDNFINLPTEGAMVGQINGLTVIDAIDHSYGEPARITATVHYGDGEVADIERKSELGGNIHAKGMMILSACLYR
IFGRDAPLHLNANIVFEQSYQEIDGDSASLAEYCCLMSAIAEQPIIQSLAITGALDQFGNVQAIGGINEKIEGFFNLCER
RGLTGEQGVIMPKSNVLQLNLAPKVITAVGKGQFHIYAIEHMDEAVELLMQMPAGVANEDNDFPEDSLYGLVQERLDKLA
GNGEEEISLMTRLLAKLGLFRH

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=421, Percent_Identity=34.916864608076, Blast_Score=241, Evalue=1e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR008268
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 64554; Mature: 64554

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNAYMNSLLIPSSSLAPEFNLPTLPQSATGLKALLLGQERVLDAFKLHNAIADQQLYLA
CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCEEEEE
DFPGIDRQLIMQALMETVEPLSSAYLVAARPVEKAIQFQWQYEAPLDNQGAIAEKNVSYR
CCCCCCHHHHHHHHHHHHHHHHHCEEEECCCHHHHHEEEEEECCCCCCCCCCCCCCCCEE
YLSGNIRRADLLGRMVQSANGSKYQPGALAQCHYVFICAESLWKREGLWDLVMQILTQKS
EECCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHEEEEEHHHHHHHCCHHHHHHHHHHHCC
YQISNHLSPIPLNCKIILIGAGLIYSQVRSEDWQFQRHFSLLAELASELDLTRFKEVQYA
HHHHCCCCCCCCCEEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NWLQAVAQSVEVGLEQSSLAPLFRYSSRLTEHQRRLSLSMLDFAQLMAQAKVYRGKATIN
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
AASVEHALEQANYRHNSSEEFSGQSFDDNFINLPTEGAMVGQINGLTVIDAIDHSYGEPA
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCEEEECCCEEEEEEHHCCCCCCE
RITATVHYGDGEVADIERKSELGGNIHAKGMMILSACLYRIFGRDAPLHLNANIVFEQSY
EEEEEEECCCCCEECCHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCCEEECCEEEEECCH
QEIDGDSASLAEYCCLMSAIAEQPIIQSLAITGALDQFGNVQAIGGINEKIEGFFNLCER
HHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHH
RGLTGEQGVIMPKSNVLQLNLAPKVITAVGKGQFHIYAIEHMDEAVELLMQMPAGVANED
CCCCCCCCEEECCCCEEEEECCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCC
NDFPEDSLYGLVQERLDKLAGNGEEEISLMTRLLAKLGLFRH
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVNAYMNSLLIPSSSLAPEFNLPTLPQSATGLKALLLGQERVLDAFKLHNAIADQQLYLA
CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCEEEEE
DFPGIDRQLIMQALMETVEPLSSAYLVAARPVEKAIQFQWQYEAPLDNQGAIAEKNVSYR
CCCCCCHHHHHHHHHHHHHHHHHCEEEECCCHHHHHEEEEEECCCCCCCCCCCCCCCCEE
YLSGNIRRADLLGRMVQSANGSKYQPGALAQCHYVFICAESLWKREGLWDLVMQILTQKS
EECCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHEEEEEHHHHHHHCCHHHHHHHHHHHCC
YQISNHLSPIPLNCKIILIGAGLIYSQVRSEDWQFQRHFSLLAELASELDLTRFKEVQYA
HHHHCCCCCCCCCEEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NWLQAVAQSVEVGLEQSSLAPLFRYSSRLTEHQRRLSLSMLDFAQLMAQAKVYRGKATIN
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
AASVEHALEQANYRHNSSEEFSGQSFDDNFINLPTEGAMVGQINGLTVIDAIDHSYGEPA
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCEEEECCCEEEEEEHHCCCCCCE
RITATVHYGDGEVADIERKSELGGNIHAKGMMILSACLYRIFGRDAPLHLNANIVFEQSY
EEEEEEECCCCCEECCHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCCEEECCEEEEECCH
QEIDGDSASLAEYCCLMSAIAEQPIIQSLAITGALDQFGNVQAIGGINEKIEGFFNLCER
HHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHH
RGLTGEQGVIMPKSNVLQLNLAPKVITAVGKGQFHIYAIEHMDEAVELLMQMPAGVANED
CCCCCCCCEEECCCCEEEEECCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCC
NDFPEDSLYGLVQERLDKLAGNGEEEISLMTRLLAKLGLFRH
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]