| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is cpdB [H]
Identifier: 117920033
GI number: 117920033
Start: 1859839
End: 1861896
Strand: Reverse
Name: cpdB [H]
Synonym: Shewana3_1585
Alternate gene names: 117920033
Gene position: 1861896-1859839 (Counterclockwise)
Preceding gene: 117920045
Following gene: 117920032
Centisome position: 37.45
GC content: 46.16
Gene sequence:
>2058_bases ATGTTAAATAAAAAACTACTCGCAGTGATGATCACTGCCGCCTTAGGCGTAAGCGCCTGTGGCTCGGATGATGAGCAAAT CGTTCAAGCAGATTTACGTGTATTAGAAACCACGGATCTGCACACAAATATCATGGATTTCAACTACTACAGTGGTAAAG AAGACCCAACAATTGGTCTAGCTCGTACCGCAAGCCTTATCCATGCCGCCCGTAAAGAAGCCAAAAACAGTGTACTCGTA GATAACGGCGACCTGCTTCAAGGTAGCCCTATGGGTGACTACATGGCTAAAGTAGGCCTGCAAATGGGCGATGTTCACCC CGCCTATAAAGCGATGAATCTATTAGATTACGAAGTAGGTAATATCGGTAACCACGAATTTAACTATGGTTTAGATTTTT TAAATAAATCACTTCATGGTGCAGAATTCCCTTATATTAACGCCAACGTCTATTGTACCGACGATAATGGCTGCTGGAAT GATGTGAAAAAAGGTGAGCATTTATTCACCCCTTATATCATTAAAGAAAAACAAATTGTCGATAGCGAAGGAAATAACCA AACCATTAAGATTGGTTATATTGGTTTTGTGCCACCACAAATCTTATTGTGGGATAAACAAAATCTGACCGGCAAAGTAA CGGTTGAAGATATTGTGGCGACTGCCAAAAAATATGTGCCTGAAATGAAAGCAAAAGGCGCTGATTTGATTATCGCAATT CCACACTCTGGTATTGGTTCGACCGAAAATCCTGGCGATCCTATGGCAGAGAACGCAACCTATGCCTTGACCTATGTCGA CGGTATTAATGCCATCCTCTTTGGTCACAGCCACTCTATTTTCCCCGATGCCAAATATGCCGACTTACCTAACACAGACG TGACTAAAGGCCTGTTAAATGGTGTGCCAGCCGTCATGCCTGGACGCTGGGGTGACAACTTAGGTGTGGTCGACTTTAAA CTCGAGCGTAAAGACGGTAAGTGGTCTGTGCTTAGTGCCACCACTAAGGCACGTCCTATCTATGATGGTGCAACTAAAAC ACCATTAGTCGAAGCCGACGCCGCCATCCATGATGCTGTCGCTGCCGAGCACCAAGGAACACTCGCCTTCGTGGACGAGC CAATTGGGGTTGCTGCCGCCGATATGTATAGCTTCTTGACCTTAGTGCAAGACGATCCAACCGTACAAATCGTTTCTGAC GCGCAAATTGCTAACGTTAAAGCCAAACTCCCCGAGGCATTAAAAGACCTGCCAGTTTTATCGGCTTCTGCACCATTCAA AGCCGGTGGTCGCCACGGTACAACCAGCGATGCAGACCAATATGTACAAGTGGATAAAGGCGCATTGACCTTTAAAAACG CCGCCGATCTTTACCTCTACCCCAACACTATGGTGGCGGTCAAAGCGACAGGTGCTGAATTGAAAGATTGGCTGGAGTGC TCGGTTAACCAATTCAATCAAATCGATCCAACCAAGACTACGCCGCAGGAATTAATCAACTGGGATGGTCACCCAACCTA CAACTTCGACGTGCTCGATGGCTTGACCTACAAGATTGATGTGACTCAACCAAGCAAGTTCGACCGCGACTGCGCCGTCG TTAATGCCAATGCTAACCGTATCGTCGATTTAAGCTACACAGATACCAACGGTAAAGTCTTCACTGGCGAAGAGTTTGCG GCCAAAGAATTTATCGTGGCCTCAAATAACTACCGCGCCTTTGGTGGCAAGTTTGCCGGTACAGGCAGTGATCATGTGGT ACTCGAACTGCCAGATACTAACCGTGAAGCCTTAGCGGCCTACATCACAGCGCAATCTAAGTTCAACGAAACCACAGGCA AGTATGAAGGCATGGTCAACCCAAGTGCTGACTACAACTGGGATTTCAAAACCATCAGCACCAATGTTGCGTTAGATATT CGCTTCCAGACCCAAGATAGCGATAAAGCCGCTGCCTTTATCGAAGCCAATAAACAACGCGAAATGACCAAGATTAGTAA AGATGAACTCGGTTTTGCCGTGTACCGCATCAACCTAAGCCAAGATAAAGCGAAGTAA
Upstream 100 bases:
>100_bases GCGACAACCTAACAGTTCTTTCGTTATGAATTAACAGGATGATGGGCATGTTCTCAAAAGAACATGTATTAGGGTCAAAT AAATATAAATAGAGAAAACG
Downstream 100 bases:
>100_bases TTTGCGTTATTACACTTAGGTTAAGCCAATATCAGGCTAAACTCAGTCTCGTACTTAGACAAGAAAGGGCTCCCAGTGAG CCTTTTCTTTATTCAAGATC
Product: bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 685; Mature: 685
Protein sequence:
>685_residues MLNKKLLAVMITAALGVSACGSDDEQIVQADLRVLETTDLHTNIMDFNYYSGKEDPTIGLARTASLIHAARKEAKNSVLV DNGDLLQGSPMGDYMAKVGLQMGDVHPAYKAMNLLDYEVGNIGNHEFNYGLDFLNKSLHGAEFPYINANVYCTDDNGCWN DVKKGEHLFTPYIIKEKQIVDSEGNNQTIKIGYIGFVPPQILLWDKQNLTGKVTVEDIVATAKKYVPEMKAKGADLIIAI PHSGIGSTENPGDPMAENATYALTYVDGINAILFGHSHSIFPDAKYADLPNTDVTKGLLNGVPAVMPGRWGDNLGVVDFK LERKDGKWSVLSATTKARPIYDGATKTPLVEADAAIHDAVAAEHQGTLAFVDEPIGVAAADMYSFLTLVQDDPTVQIVSD AQIANVKAKLPEALKDLPVLSASAPFKAGGRHGTTSDADQYVQVDKGALTFKNAADLYLYPNTMVAVKATGAELKDWLEC SVNQFNQIDPTKTTPQELINWDGHPTYNFDVLDGLTYKIDVTQPSKFDRDCAVVNANANRIVDLSYTDTNGKVFTGEEFA AKEFIVASNNYRAFGGKFAGTGSDHVVLELPDTNREALAAYITAQSKFNETTGKYEGMVNPSADYNWDFKTISTNVALDI RFQTQDSDKAAAFIEANKQREMTKISKDELGFAVYRINLSQDKAK
Sequences:
>Translated_685_residues MLNKKLLAVMITAALGVSACGSDDEQIVQADLRVLETTDLHTNIMDFNYYSGKEDPTIGLARTASLIHAARKEAKNSVLV DNGDLLQGSPMGDYMAKVGLQMGDVHPAYKAMNLLDYEVGNIGNHEFNYGLDFLNKSLHGAEFPYINANVYCTDDNGCWN DVKKGEHLFTPYIIKEKQIVDSEGNNQTIKIGYIGFVPPQILLWDKQNLTGKVTVEDIVATAKKYVPEMKAKGADLIIAI PHSGIGSTENPGDPMAENATYALTYVDGINAILFGHSHSIFPDAKYADLPNTDVTKGLLNGVPAVMPGRWGDNLGVVDFK LERKDGKWSVLSATTKARPIYDGATKTPLVEADAAIHDAVAAEHQGTLAFVDEPIGVAAADMYSFLTLVQDDPTVQIVSD AQIANVKAKLPEALKDLPVLSASAPFKAGGRHGTTSDADQYVQVDKGALTFKNAADLYLYPNTMVAVKATGAELKDWLEC SVNQFNQIDPTKTTPQELINWDGHPTYNFDVLDGLTYKIDVTQPSKFDRDCAVVNANANRIVDLSYTDTNGKVFTGEEFA AKEFIVASNNYRAFGGKFAGTGSDHVVLELPDTNREALAAYITAQSKFNETTGKYEGMVNPSADYNWDFKTISTNVALDI RFQTQDSDKAAAFIEANKQREMTKISKDELGFAVYRINLSQDKAK >Mature_685_residues MLNKKLLAVMITAALGVSACGSDDEQIVQADLRVLETTDLHTNIMDFNYYSGKEDPTIGLARTASLIHAARKEAKNSVLV DNGDLLQGSPMGDYMAKVGLQMGDVHPAYKAMNLLDYEVGNIGNHEFNYGLDFLNKSLHGAEFPYINANVYCTDDNGCWN DVKKGEHLFTPYIIKEKQIVDSEGNNQTIKIGYIGFVPPQILLWDKQNLTGKVTVEDIVATAKKYVPEMKAKGADLIIAI PHSGIGSTENPGDPMAENATYALTYVDGINAILFGHSHSIFPDAKYADLPNTDVTKGLLNGVPAVMPGRWGDNLGVVDFK LERKDGKWSVLSATTKARPIYDGATKTPLVEADAAIHDAVAAEHQGTLAFVDEPIGVAAADMYSFLTLVQDDPTVQIVSD AQIANVKAKLPEALKDLPVLSASAPFKAGGRHGTTSDADQYVQVDKGALTFKNAADLYLYPNTMVAVKATGAELKDWLEC SVNQFNQIDPTKTTPQELINWDGHPTYNFDVLDGLTYKIDVTQPSKFDRDCAVVNANANRIVDLSYTDTNGKVFTGEEFA AKEFIVASNNYRAFGGKFAGTGSDHVVLELPDTNREALAAYITAQSKFNETTGKYEGMVNPSADYNWDFKTISTNVALDI RFQTQDSDKAAAFIEANKQREMTKISKDELGFAVYRINLSQDKAK
Specific function: This bifunctional enzyme catalyzes two consecutive reactions during ribonucleic acid degradation. Converts a 2',3'- cyclic nucleotide to a 3'-nucleotide and then the 3'-nucleotide to the corresponding nucleoside and phosphate [H]
COG id: COG0737
COG function: function code F; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 5'-nucleotidase family [H]
Homologues:
Organism=Escherichia coli, GI1790658, Length=679, Percent_Identity=53.6082474226804, Blast_Score=743, Evalue=0.0, Organism=Escherichia coli, GI1786687, Length=498, Percent_Identity=21.8875502008032, Blast_Score=78, Evalue=1e-15,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008334 - InterPro: IPR006146 - InterPro: IPR006179 - InterPro: IPR006294 - InterPro: IPR004843 [H]
Pfam domain/function: PF02872 5_nucleotid_C; PF00149 Metallophos [H]
EC number: =3.1.3.6; =3.1.4.16 [H]
Molecular weight: Translated: 74730; Mature: 74730
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00786 5_NUCLEOTIDASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNKKLLAVMITAALGVSACGSDDEQIVQADLRVLETTDLHTNIMDFNYYSGKEDPTIGL CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEECCCCCEEEEEECCCCCCCCCEEH ARTASLIHAARKEAKNSVLVDNGDLLQGSPMGDYMAKVGLQMGDVHPAYKAMNLLDYEVG HHHHHHHHHHHHHHCCCEEEECCCEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHEEECC NIGNHEFNYGLDFLNKSLHGAEFPYINANVYCTDDNGCWNDVKKGEHLFTPYIIKEKQIV CCCCCCCCCCHHHHHCCCCCCCCCEECCEEEEECCCCCHHHHCCCCEEECCEEEECCEEE DSEGNNQTIKIGYIGFVPPQILLWDKQNLTGKVTVEDIVATAKKYVPEMKAKGADLIIAI CCCCCCCEEEEEEEECCCCEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEC PHSGIGSTENPGDPMAENATYALTYVDGINAILFGHSHSIFPDAKYADLPNTDVTKGLLN CCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHC GVPAVMPGRWGDNLGVVDFKLERKDGKWSVLSATTKARPIYDGATKTPLVEADAAIHDAV CCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEECCHHHHHHH AAEHQGTLAFVDEPIGVAAADMYSFLTLVQDDPTVQIVSDAQIANVKAKLPEALKDLPVL HHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCEEECHHHHHHHHHHHCCCE SASAPFKAGGRHGTTSDADQYVQVDKGALTFKNAADLYLYPNTMVAVKATGAELKDWLEC ECCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCCEEEEECCEEEEEEECCHHHHHHHHH SVNQFNQIDPTKTTPQELINWDGHPTYNFDVLDGLTYKIDVTQPSKFDRDCAVVNANANR HHHHCCCCCCCCCCHHHHHCCCCCCCEEEEEECCEEEEEEECCCCCCCCCEEEEECCCCE IVDLSYTDTNGKVFTGEEFAAKEFIVASNNYRAFGGKFAGTGSDHVVLELPDTNREALAA EEEEEEECCCCEEEECCCCCCCEEEEECCCEEECCCEECCCCCCEEEEECCCCCHHHEEE YITAQSKFNETTGKYEGMVNPSADYNWDFKTISTNVALDIRFQTQDSDKAAAFIEANKQR EEEECHHCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEEEEEECCCCCCEEEEEECCCHH EMTKISKDELGFAVYRINLSQDKAK HHHHCCHHHCCEEEEEEECCCCCCC >Mature Secondary Structure MLNKKLLAVMITAALGVSACGSDDEQIVQADLRVLETTDLHTNIMDFNYYSGKEDPTIGL CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEECCCCCEEEEEECCCCCCCCCEEH ARTASLIHAARKEAKNSVLVDNGDLLQGSPMGDYMAKVGLQMGDVHPAYKAMNLLDYEVG HHHHHHHHHHHHHHCCCEEEECCCEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHEEECC NIGNHEFNYGLDFLNKSLHGAEFPYINANVYCTDDNGCWNDVKKGEHLFTPYIIKEKQIV CCCCCCCCCCHHHHHCCCCCCCCCEECCEEEEECCCCCHHHHCCCCEEECCEEEECCEEE DSEGNNQTIKIGYIGFVPPQILLWDKQNLTGKVTVEDIVATAKKYVPEMKAKGADLIIAI CCCCCCCEEEEEEEECCCCEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEC PHSGIGSTENPGDPMAENATYALTYVDGINAILFGHSHSIFPDAKYADLPNTDVTKGLLN CCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHC GVPAVMPGRWGDNLGVVDFKLERKDGKWSVLSATTKARPIYDGATKTPLVEADAAIHDAV CCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEECCHHHHHHH AAEHQGTLAFVDEPIGVAAADMYSFLTLVQDDPTVQIVSDAQIANVKAKLPEALKDLPVL HHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCEEECHHHHHHHHHHHCCCE SASAPFKAGGRHGTTSDADQYVQVDKGALTFKNAADLYLYPNTMVAVKATGAELKDWLEC ECCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCCEEEEECCEEEEEEECCHHHHHHHHH SVNQFNQIDPTKTTPQELINWDGHPTYNFDVLDGLTYKIDVTQPSKFDRDCAVVNANANR HHHHCCCCCCCCCCHHHHHCCCCCCCEEEEEECCEEEEEEECCCCCCCCCEEEEECCCCE IVDLSYTDTNGKVFTGEEFAAKEFIVASNNYRAFGGKFAGTGSDHVVLELPDTNREALAA EEEEEEECCCCEEEECCCCCCCEEEEECCCEEECCCEECCCCCCEEEEECCCCCHHHEEE YITAQSKFNETTGKYEGMVNPSADYNWDFKTISTNVALDIRFQTQDSDKAAAFIEANKQR EEEECHHCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEEEEEECCCCCCEEEEEECCCHH EMTKISKDELGFAVYRINLSQDKAK HHHHCCHHHCCEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA