| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is cirA [H]
Identifier: 117920006
GI number: 117920006
Start: 1817567
End: 1820218
Strand: Reverse
Name: cirA [H]
Synonym: Shewana3_1558
Alternate gene names: 117920006
Gene position: 1820218-1817567 (Counterclockwise)
Preceding gene: 117920007
Following gene: 117920003
Centisome position: 36.61
GC content: 43.25
Gene sequence:
>2652_bases ATGCGCGCTAATTCGACATTAGCCAAAGCGGTTCGCTTTGCGTTAATTGGTGGTGCCACAACAGCAGCTTTATCTAGTAC TGTTGTTTATGCTGCAGAGGATAACGCTAAGGTAGAACGTATTGAAGTAACAGGTTCCCGTATTCAAAGAACTGATATGG AATCAGCGTTACCTGTTACTGTTTTATCGGCCGAAGATATTGCCAAAACAGGTTTAAGTGATGTTTCTGCTGTTTTAGCA CAAATGCCATTTAACACTGCTGGTAGTTTTATTAGTGATGCAGGTAGCTCTGCAAGTAACCATGCCAGTTCTGGTATGCG TGGTTTAGGTTCAAACCGTACGTTAACCCTGATCAACGGTCGCCGTATTGCGCCATCTGCAACCTTTGGTGGCGATTCAA CGAACCTCAACTTAATCCCTATGGATGCAATCGAGCGTATTGAAATTTTACGTGACGGTGCATCAGCAATTTACGGTTCA GATGCTATCGGTGGTGTAATTAACATCATCCTGAAAAAAACCTTTGACGGTTTAGCATTCGACGCTAAGTTTGGTAGCCC AACTCAAGGTGGTAGAGATGAGAAATCAGCTTCTGTCACTTTCGGTAATACTAGCGATAAAAGCAGCAGCTTAGTGATCA TCGAACACAAGCAATTTGATCCACTACAAGGTGGTCAACGTCCTCACTTAACGGCTAACTGGGATAAAAAATACGGTCGT AGTGGTTTATATGCGCCAGAAGGCACATATCGTCCAGTTGAATCTCGCCCGGTAAAAGGTGCTGATGGTACTTTCGGCAC TCCTGTTTATACAGGTTTGCAAGTTCCAGGTAAGGACTGTCCAGCGGATCGTATTGTTACCAGCAAAGACGGTTCTGCTT GTGGTTTTAACCAATTTGATGGCACTGATTACCTACCAGATCAGACAAAAGACTCTGTATTCTCGAATATGACTTATCGC ATTACCGATGAATTAGAGTGGTTTGGTCAAGCTATCGTTATGCGTGATAAATCCATCACCTCTTCAACTGCGCTATGGAC TCCTAACTTATACATGGCAGCAGATAACCCATTAAACCCAACATTCGGTACCGCTAATGCATCTGAAGTGCAAGCCTATC ACCGTTTGAAAGGGGTTGCAGACCGTAAAACAGAATTCGATTCAAACGTAGTTGATATCGTAACGGGTCTAAACCTTGAA TTAGATGCAGGCTCTCTAAGCTGGTACGTACAATACTCAGATCAAATCGTGAACATTGAAACTGACTCTTACGTATTCGA AGATAAGTTACAAGAAGCAGTAGATAAAGGCTTGTACAACCCATTCGTTGAGGGTGGTAACGCAACCCAAGACACGTTAG ACACCTTCTTACACACAGCTACTCGTAAAGCGACATCTAACACAACAGGTACTGGTATATCTTGGGCTGCACTGGCTCCA ATTTCATTACCTGGTGGTGACTTAGGTTACGCAGTGGGTATGGAATACCAAAAAATCGAATACAAAGATACCCGTGATGC TCAACAAGCAGCAGGTAACGTATTAGGTACTTACGGCGGTGATTCTGCTGGTGATAGAAGCTATAAAGCAGCATTCGTTG AGTTGGAACTGCCAGTATTAGATCACTTAAACGTGAAACTAGCGAGCCGTTACGACCAATATAGCTTGCCAGATGTTGGT CAGCTTTCAAGCTCTGTAAACGTACGTTACGAAGCATTAGATAACCTAGTGTTACGTGCATCTTACGGCCAAGGCTTTAG AGCACCATCACTGGATGACTTGTTAGGCAAGCCAGCAACCAGTTATGACAGAATCACTGACACCACTCTGTGTCAAAGTC TGCCTGCTGATCAGAAAGACGGCAACCCAGCTTGTGAAGATAACCAATACCTACGTAAGAGTTCAGGTAACACAGAGCTA GATCCTGAGAAATCTGCTCAGTACTCTTTCGGTGCCGTATGGAATATCACTGAAAACATCGACTTAGTTGTTGATTATTA CAACATCGAAATCACAGACCAAGTCAGCTACATCGATGCACAAACAATTGTGGATTTAGAAGCGATTGGTGGCTTAGGTG CTTATGACCCTAACTACATCTACGTCAAACGTAAAGCTGACGGTACCATCGATGAAATTGGCGCTGGCAACATCAACATG GATGGCGTACAAACATCAGGTCTTGACGTGTCATTCACCTCAAACTTCGATTTTGCTGAATTTGGTGCATTTAAGTTTGC GGTTGAAGGAACCTATGCTCTTGAATATACAGAGCAAGCAAGCCCGATTGCAAAACGTTATGACGTATTAGGCACTAAGG GTTATCCACCACTACGTTTCAATACAACATTTAGCTACGCCATTGATGACTTCTCAGCATCTTTGATTGCTAAATACATT GATTCTTATGATGGTGAAACTCCACAACAACAAGAAGTTGGCACAAATAAACAAGACTTCTCATCGTTCACTACGTGGGA TCTGACATTGAACTACGACTTCGACAGCTATGGCAAAGTTACTGTTGGTGCTCGTAACTTGTTCGATGCGATGCCAACAG TTAACTACAGCTTAGGTTACCCTGGATACGATACTGACACCCATAACATCGTGGGCCGTGTAGTGTTTGCAGGATATAAA GTGAAATTCTAA
Upstream 100 bases:
>100_bases TATATCTTGAGCCTAATTAAATAGGGCTCTATTTCTTAAAACGTTCCGTATTTAATTAAAATAACAATTAAACAAATAAC AAGTGTTAAGGGAGAATGAT
Downstream 100 bases:
>100_bases TTTCCCTATAGGAAGATAGAAAACCACACAAAAACGGCATCCTCGGATGCCGTTTTTTTATCTACTATTTAACCAAATAA CTAAGTTAGCCTTTAGCGCC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 883; Mature: 883
Protein sequence:
>883_residues MRANSTLAKAVRFALIGGATTAALSSTVVYAAEDNAKVERIEVTGSRIQRTDMESALPVTVLSAEDIAKTGLSDVSAVLA QMPFNTAGSFISDAGSSASNHASSGMRGLGSNRTLTLINGRRIAPSATFGGDSTNLNLIPMDAIERIEILRDGASAIYGS DAIGGVINIILKKTFDGLAFDAKFGSPTQGGRDEKSASVTFGNTSDKSSSLVIIEHKQFDPLQGGQRPHLTANWDKKYGR SGLYAPEGTYRPVESRPVKGADGTFGTPVYTGLQVPGKDCPADRIVTSKDGSACGFNQFDGTDYLPDQTKDSVFSNMTYR ITDELEWFGQAIVMRDKSITSSTALWTPNLYMAADNPLNPTFGTANASEVQAYHRLKGVADRKTEFDSNVVDIVTGLNLE LDAGSLSWYVQYSDQIVNIETDSYVFEDKLQEAVDKGLYNPFVEGGNATQDTLDTFLHTATRKATSNTTGTGISWAALAP ISLPGGDLGYAVGMEYQKIEYKDTRDAQQAAGNVLGTYGGDSAGDRSYKAAFVELELPVLDHLNVKLASRYDQYSLPDVG QLSSSVNVRYEALDNLVLRASYGQGFRAPSLDDLLGKPATSYDRITDTTLCQSLPADQKDGNPACEDNQYLRKSSGNTEL DPEKSAQYSFGAVWNITENIDLVVDYYNIEITDQVSYIDAQTIVDLEAIGGLGAYDPNYIYVKRKADGTIDEIGAGNINM DGVQTSGLDVSFTSNFDFAEFGAFKFAVEGTYALEYTEQASPIAKRYDVLGTKGYPPLRFNTTFSYAIDDFSASLIAKYI DSYDGETPQQQEVGTNKQDFSSFTTWDLTLNYDFDSYGKVTVGARNLFDAMPTVNYSLGYPGYDTDTHNIVGRVVFAGYK VKF
Sequences:
>Translated_883_residues MRANSTLAKAVRFALIGGATTAALSSTVVYAAEDNAKVERIEVTGSRIQRTDMESALPVTVLSAEDIAKTGLSDVSAVLA QMPFNTAGSFISDAGSSASNHASSGMRGLGSNRTLTLINGRRIAPSATFGGDSTNLNLIPMDAIERIEILRDGASAIYGS DAIGGVINIILKKTFDGLAFDAKFGSPTQGGRDEKSASVTFGNTSDKSSSLVIIEHKQFDPLQGGQRPHLTANWDKKYGR SGLYAPEGTYRPVESRPVKGADGTFGTPVYTGLQVPGKDCPADRIVTSKDGSACGFNQFDGTDYLPDQTKDSVFSNMTYR ITDELEWFGQAIVMRDKSITSSTALWTPNLYMAADNPLNPTFGTANASEVQAYHRLKGVADRKTEFDSNVVDIVTGLNLE LDAGSLSWYVQYSDQIVNIETDSYVFEDKLQEAVDKGLYNPFVEGGNATQDTLDTFLHTATRKATSNTTGTGISWAALAP ISLPGGDLGYAVGMEYQKIEYKDTRDAQQAAGNVLGTYGGDSAGDRSYKAAFVELELPVLDHLNVKLASRYDQYSLPDVG QLSSSVNVRYEALDNLVLRASYGQGFRAPSLDDLLGKPATSYDRITDTTLCQSLPADQKDGNPACEDNQYLRKSSGNTEL DPEKSAQYSFGAVWNITENIDLVVDYYNIEITDQVSYIDAQTIVDLEAIGGLGAYDPNYIYVKRKADGTIDEIGAGNINM DGVQTSGLDVSFTSNFDFAEFGAFKFAVEGTYALEYTEQASPIAKRYDVLGTKGYPPLRFNTTFSYAIDDFSASLIAKYI DSYDGETPQQQEVGTNKQDFSSFTTWDLTLNYDFDSYGKVTVGARNLFDAMPTVNYSLGYPGYDTDTHNIVGRVVFAGYK VKF >Mature_883_residues MRANSTLAKAVRFALIGGATTAALSSTVVYAAEDNAKVERIEVTGSRIQRTDMESALPVTVLSAEDIAKTGLSDVSAVLA QMPFNTAGSFISDAGSSASNHASSGMRGLGSNRTLTLINGRRIAPSATFGGDSTNLNLIPMDAIERIEILRDGASAIYGS DAIGGVINIILKKTFDGLAFDAKFGSPTQGGRDEKSASVTFGNTSDKSSSLVIIEHKQFDPLQGGQRPHLTANWDKKYGR SGLYAPEGTYRPVESRPVKGADGTFGTPVYTGLQVPGKDCPADRIVTSKDGSACGFNQFDGTDYLPDQTKDSVFSNMTYR ITDELEWFGQAIVMRDKSITSSTALWTPNLYMAADNPLNPTFGTANASEVQAYHRLKGVADRKTEFDSNVVDIVTGLNLE LDAGSLSWYVQYSDQIVNIETDSYVFEDKLQEAVDKGLYNPFVEGGNATQDTLDTFLHTATRKATSNTTGTGISWAALAP ISLPGGDLGYAVGMEYQKIEYKDTRDAQQAAGNVLGTYGGDSAGDRSYKAAFVELELPVLDHLNVKLASRYDQYSLPDVG QLSSSVNVRYEALDNLVLRASYGQGFRAPSLDDLLGKPATSYDRITDTTLCQSLPADQKDGNPACEDNQYLRKSSGNTEL DPEKSAQYSFGAVWNITENIDLVVDYYNIEITDQVSYIDAQTIVDLEAIGGLGAYDPNYIYVKRKADGTIDEIGAGNINM DGVQTSGLDVSFTSNFDFAEFGAFKFAVEGTYALEYTEQASPIAKRYDVLGTKGYPPLRFNTTFSYAIDDFSASLIAKYI DSYDGETPQQQEVGTNKQDFSSFTTWDLTLNYDFDSYGKVTVGARNLFDAMPTVNYSLGYPGYDTDTHNIVGRVVFAGYK VKF
Specific function: Not yet known. Postulated to participate in iron transport. Outer membrane receptor for colicins IA and IB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=162, Percent_Identity=33.9506172839506, Blast_Score=95, Evalue=2e-20, Organism=Escherichia coli, GI1790405, Length=164, Percent_Identity=32.3170731707317, Blast_Score=77, Evalue=4e-15, Organism=Escherichia coli, GI1786798, Length=144, Percent_Identity=34.7222222222222, Blast_Score=66, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 95634; Mature: 95634
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRANSTLAKAVRFALIGGATTAALSSTVVYAAEDNAKVERIEVTGSRIQRTDMESALPVT CCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEECCCCEEEEEEECCCHHHHCCCCCCCCEE VLSAEDIAKTGLSDVSAVLAQMPFNTAGSFISDAGSSASNHASSGMRGLGSNRTLTLING EECHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHCCCCCCCCCEEEEEEC RRIAPSATFGGDSTNLNLIPMDAIERIEILRDGASAIYGSDAIGGVINIILKKTFDGLAF CEECCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCHHEECCHHHHHHHHHHHHHHCCCEEE DAKFGSPTQGGRDEKSASVTFGNTSDKSSSLVIIEHKQFDPLQGGQRPHLTANWDKKYGR ECCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCHHHCC SGLYAPEGTYRPVESRPVKGADGTFGTPVYTGLQVPGKDCPADRIVTSKDGSACGFNQFD CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECEECCCCCCCCCCEEECCCCCCCCCCCCC GTDYLPDQTKDSVFSNMTYRITDELEWFGQAIVMRDKSITSSTALWTPNLYMAADNPLNP CCCCCCCCCHHHHHHCCEEEEEHHHHHHCCEEEEECCCCCCCEEEECCCEEEEECCCCCC TFGTANASEVQAYHRLKGVADRKTEFDSNVVDIVTGLNLELDAGSLSWYVQYSDQIVNIE CCCCCCHHHHHHHHHHHCCHHCCHHCCCCCEEEEECCCEEECCCCEEEEEEECCEEEEEE TDSYVFEDKLQEAVDKGLYNPFVEGGNATQDTLDTFLHTATRKATSNTTGTGISWAALAP CCCCHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC ISLPGGDLGYAVGMEYQKIEYKDTRDAQQAAGNVLGTYGGDSAGDRSYKAAFVELELPVL EECCCCCCCEEECCCEEEECCCCCCCHHHHCCCEEECCCCCCCCCCCEEEEEEEEECCHH DHLNVKLASRYDQYSLPDVGQLSSSVNVRYEALDNLVLRASYGQGFRAPSLDDLLGKPAT CCCCCHHHHCCCCCCCCCHHHCCCCCEEEHHHHCCEEEEECCCCCCCCCCHHHHHCCCCC SYDRITDTTLCQSLPADQKDGNPACEDNQYLRKSSGNTELDPEKSAQYSFGAVWNITENI CHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCE DLVVDYYNIEITDQVSYIDAQTIVDLEAIGGLGAYDPNYIYVKRKADGTIDEIGAGNINM EEEEEEEEEEEECCEEEECHHHEEEHHHHCCCCCCCCCEEEEEECCCCCHHHCCCCCCCC DGVQTSGLDVSFTSNFDFAEFGAFKFAVEGTYALEYTEQASPIAKRYDVLGTKGYPPLRF CCEEECCEEEEEECCCCHHHHCCEEEEECCEEEEEECCCCCHHHHHHHHCCCCCCCCEEE NTTFSYAIDDFSASLIAKYIDSYDGETPQQQEVGTNKQDFSSFTTWDLTLNYDFDSYGKV CCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHCCCEEEEEEEEEECCCCCCEE TVGARNLFDAMPTVNYSLGYPGYDTDTHNIVGRVVFAGYKVKF EECHHHHHHCCCCCEEECCCCCCCCCHHHHHEEEEEEEEEEEC >Mature Secondary Structure MRANSTLAKAVRFALIGGATTAALSSTVVYAAEDNAKVERIEVTGSRIQRTDMESALPVT CCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEECCCCEEEEEEECCCHHHHCCCCCCCCEE VLSAEDIAKTGLSDVSAVLAQMPFNTAGSFISDAGSSASNHASSGMRGLGSNRTLTLING EECHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHCCCCCCCCCEEEEEEC RRIAPSATFGGDSTNLNLIPMDAIERIEILRDGASAIYGSDAIGGVINIILKKTFDGLAF CEECCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCHHEECCHHHHHHHHHHHHHHCCCEEE DAKFGSPTQGGRDEKSASVTFGNTSDKSSSLVIIEHKQFDPLQGGQRPHLTANWDKKYGR ECCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCHHHCC SGLYAPEGTYRPVESRPVKGADGTFGTPVYTGLQVPGKDCPADRIVTSKDGSACGFNQFD CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECEECCCCCCCCCCEEECCCCCCCCCCCCC GTDYLPDQTKDSVFSNMTYRITDELEWFGQAIVMRDKSITSSTALWTPNLYMAADNPLNP CCCCCCCCCHHHHHHCCEEEEEHHHHHHCCEEEEECCCCCCCEEEECCCEEEEECCCCCC TFGTANASEVQAYHRLKGVADRKTEFDSNVVDIVTGLNLELDAGSLSWYVQYSDQIVNIE CCCCCCHHHHHHHHHHHCCHHCCHHCCCCCEEEEECCCEEECCCCEEEEEEECCEEEEEE TDSYVFEDKLQEAVDKGLYNPFVEGGNATQDTLDTFLHTATRKATSNTTGTGISWAALAP CCCCHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC ISLPGGDLGYAVGMEYQKIEYKDTRDAQQAAGNVLGTYGGDSAGDRSYKAAFVELELPVL EECCCCCCCEEECCCEEEECCCCCCCHHHHCCCEEECCCCCCCCCCCEEEEEEEEECCHH DHLNVKLASRYDQYSLPDVGQLSSSVNVRYEALDNLVLRASYGQGFRAPSLDDLLGKPAT CCCCCHHHHCCCCCCCCCHHHCCCCCEEEHHHHCCEEEEECCCCCCCCCCHHHHHCCCCC SYDRITDTTLCQSLPADQKDGNPACEDNQYLRKSSGNTELDPEKSAQYSFGAVWNITENI CHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCE DLVVDYYNIEITDQVSYIDAQTIVDLEAIGGLGAYDPNYIYVKRKADGTIDEIGAGNINM EEEEEEEEEEEECCEEEECHHHEEEHHHHCCCCCCCCCEEEEEECCCCCHHHCCCCCCCC DGVQTSGLDVSFTSNFDFAEFGAFKFAVEGTYALEYTEQASPIAKRYDVLGTKGYPPLRF CCEEECCEEEEEECCCCHHHHCCEEEEECCEEEEEECCCCCHHHHHHHHCCCCCCCCEEE NTTFSYAIDDFSASLIAKYIDSYDGETPQQQEVGTNKQDFSSFTTWDLTLNYDFDSYGKV CCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHCCCEEEEEEEEEECCCCCCEE TVGARNLFDAMPTVNYSLGYPGYDTDTHNIVGRVVFAGYKVKF EECHHHHHHCCCCCEEECCCCCCCCCHHHHHEEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2644220; 9278503; 3316180; 1315732; 2160948 [H]