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The map label for this gene is yiaM [C]

Identifier: 117919863

GI number: 117919863

Start: 1640125

End: 1640769

Strand: Reverse

Name: yiaM [C]

Synonym: Shewana3_1415

Alternate gene names: 117919863

Gene position: 1640769-1640125 (Counterclockwise)

Preceding gene: 117919864

Following gene: 117919862

Centisome position: 33.0

GC content: 42.33

Gene sequence:

>645_bases
GTGATATCGCGAATTTTTGGTTACTTTGAAGAAGGGGTGCTCAACCTCTTAATCACCTTAATGACACTCTTAGTGTTCAC
AGAGGTAGTGGCGCGGTTTTTCTTCAATACCGGTTTTTTATGGATCCAAGAACTGACCTTAACCCTTTGTGGTTGGTTTG
TGCTTTTTGGTATGTCCTATGGGGTGAAAGTCGGTGCTCACATCGGTGTTGATGCGTTTGTAAAAAATCTGCCCCCTAAG
GCTAAAAAGATCACTTCCCTAGTGACGGCATTGATTTGCTTAGCTTATTGCGGACTATTTTTAAAAGGTAGCTGGGAATA
TCTGTCACAGATGTACCAAATCGGCGTACCGATGGAAGATATTCACTTTCCTAAGTTCCTGTTAAACAGCTTAGATCCCG
ACTTTGCTTGGAACACCTTAAAGATTGATGTCGAAGACGGCGCTGTGCCCATTTGGTTATCCCAAAGCATTCTATTAATT
GGTTTTAGCATGTTGACTTGGCGTTTCTTAGAACTGTTTATCGCCATCCTACGCAACCAAGTTTCTGGATTCCAATTTGC
CGATGAAGCGAAAGAAAGCATGCATTTAATTGACGAAGCTGCTCAGCACGCACAACAAGAAACAGACAATAAGGAAGCGA
AGTAA

Upstream 100 bases:

>100_bases
ATGTGATTGAAGCCGCTGTTGCTGCAAATAAACAATAATGAAATAAACCGCTTAACCTCTATTTGGGGTTAAGCGGTATT
TGAGCGAGGGGAGTACAGCT

Downstream 100 bases:

>100_bases
TGGCCATTGCGACCCTCTTTACTGCCCTACTCGTCTGTATGTTTTTAGGTATGCCTATCGCGATTGCGTTAGGTTTCTCG
AGCATGCTGACGATTTTATT

Product: tripartite ATP-independent periplasmic transporter DctQ

Products: NA

Alternate protein names: Trap Transporter Dctq Subunit; C4-Dicarboxylate Transporter; C4-Dicarboxylate Transport Protein DctQ; Dicarboxylate Transporter; C4-Dicarboxylate Transporter Small Permease Component; Transporter-Like Membrane Protein; TRAP-Type C4-Dicarboxylate Transporter Small Permease; TRAP Transporter DctQ-Like Membrane Protein; C4-Dicarboxylate Transporter Small Subunit; TRAP Transporter DctQ Subunit

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MISRIFGYFEEGVLNLLITLMTLLVFTEVVARFFFNTGFLWIQELTLTLCGWFVLFGMSYGVKVGAHIGVDAFVKNLPPK
AKKITSLVTALICLAYCGLFLKGSWEYLSQMYQIGVPMEDIHFPKFLLNSLDPDFAWNTLKIDVEDGAVPIWLSQSILLI
GFSMLTWRFLELFIAILRNQVSGFQFADEAKESMHLIDEAAQHAQQETDNKEAK

Sequences:

>Translated_214_residues
MISRIFGYFEEGVLNLLITLMTLLVFTEVVARFFFNTGFLWIQELTLTLCGWFVLFGMSYGVKVGAHIGVDAFVKNLPPK
AKKITSLVTALICLAYCGLFLKGSWEYLSQMYQIGVPMEDIHFPKFLLNSLDPDFAWNTLKIDVEDGAVPIWLSQSILLI
GFSMLTWRFLELFIAILRNQVSGFQFADEAKESMHLIDEAAQHAQQETDNKEAK
>Mature_214_residues
MISRIFGYFEEGVLNLLITLMTLLVFTEVVARFFFNTGFLWIQELTLTLCGWFVLFGMSYGVKVGAHIGVDAFVKNLPPK
AKKITSLVTALICLAYCGLFLKGSWEYLSQMYQIGVPMEDIHFPKFLLNSLDPDFAWNTLKIDVEDGAVPIWLSQSILLI
GFSMLTWRFLELFIAILRNQVSGFQFADEAKESMHLIDEAAQHAQQETDNKEAK

Specific function: Unknown

COG id: COG3090

COG function: function code G; TRAP-type C4-dicarboxylate transport system, small permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24336; Mature: 24336

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISRIFGYFEEGVLNLLITLMTLLVFTEVVARFFFNTGFLWIQELTLTLCGWFVLFGMSY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
GVKVGAHIGVDAFVKNLPPKAKKITSLVTALICLAYCGLFLKGSWEYLSQMYQIGVPMED
CCHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH
IHFPKFLLNSLDPDFAWNTLKIDVEDGAVPIWLSQSILLIGFSMLTWRFLELFIAILRNQ
HHHHHHHHHCCCCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSGFQFADEAKESMHLIDEAAQHAQQETDNKEAK
HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MISRIFGYFEEGVLNLLITLMTLLVFTEVVARFFFNTGFLWIQELTLTLCGWFVLFGMSY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
GVKVGAHIGVDAFVKNLPPKAKKITSLVTALICLAYCGLFLKGSWEYLSQMYQIGVPMED
CCHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH
IHFPKFLLNSLDPDFAWNTLKIDVEDGAVPIWLSQSILLIGFSMLTWRFLELFIAILRNQ
HHHHHHHHHCCCCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSGFQFADEAKESMHLIDEAAQHAQQETDNKEAK
HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA