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The map label for this gene is gfcB [H]

Identifier: 117919843

GI number: 117919843

Start: 1610831

End: 1611541

Strand: Reverse

Name: gfcB [H]

Synonym: Shewana3_1395

Alternate gene names: 117919843

Gene position: 1611541-1610831 (Counterclockwise)

Preceding gene: 117919844

Following gene: 117919842

Centisome position: 32.41

GC content: 41.49

Gene sequence:

>711_bases
ATGCGTGTATATAAAAAACTCCTCCCCTTTTTTGCCATTTCGGCAATAATTGCAGGGCTCTCGGGCTGTAGCCAACGAAT
TAATGCTCTGAACGAAACCGCCAAACTCGCCTTTTTAGGAAGTGAGGATGTTGTTCTCCCCCCTGAGCAAATATCTGCAA
ATCCCTATGCCAGCATCTATGTAAAAATTGAAGATACACCTCAGGCATTTGTGGTGCTAGCTTTTGCTGAACCTAAAACT
AGTCTATCTGCAGTAAAAAAGGTACCTGAAGCACTAGAGCTTAAATGGTTATCTGCGGATAAAGGTATGTTAGTTACGGT
AAACGGCCGCTTAGTCAAAACCCACAATCTACTCACTGGTAATTTAAGTGCGGTTGAAAGTGATGACCCGGACCCTTTGC
TACTAGGTTTGCACTTAAGCAATACACCCAAATTCTGGACTCGTACACTGGACTGGCAACCCGGTTATCATTATGGCTAC
AAAGCAAAGTCAGAATTTAAATTGATTGCCGAAGAGAATATTCTAATCAATGGCTTTCCTACGCAAGCCCTACATTTTAG
TGAATATGTCTCTGTGGATACCCTCAATATCCAATACCAAAATGATTTTTGGCTAGATCCACAAAATGGTAACGTCCTTA
AGAGTCGTCAAAAGATTGCACCTAATCTGCCATTTATTGACATCACATTACTAAAGCCTTTTGCGGCATAG

Upstream 100 bases:

>100_bases
TAGGGTATTTAAATTTCCTAATCAAAATAGTGAAAACTTGAAATCATCTCGCCATATATTTACATTGGTTATCTATCATT
ATTGAGAATAAGCAACTCGG

Downstream 100 bases:

>100_bases
TGGAGCCATAATGAGATCCTATATAACACCTGTGGCTTTACTGCTCAGTACCTTGTCTTTATCAACAGCCCAAGCAAATA
TCCAACTTTATGTCAGTATA

Product: putative lipoprotein

Products: NA

Alternate protein names: Group 4 capsule protein B homolog [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MRVYKKLLPFFAISAIIAGLSGCSQRINALNETAKLAFLGSEDVVLPPEQISANPYASIYVKIEDTPQAFVVLAFAEPKT
SLSAVKKVPEALELKWLSADKGMLVTVNGRLVKTHNLLTGNLSAVESDDPDPLLLGLHLSNTPKFWTRTLDWQPGYHYGY
KAKSEFKLIAEENILINGFPTQALHFSEYVSVDTLNIQYQNDFWLDPQNGNVLKSRQKIAPNLPFIDITLLKPFAA

Sequences:

>Translated_236_residues
MRVYKKLLPFFAISAIIAGLSGCSQRINALNETAKLAFLGSEDVVLPPEQISANPYASIYVKIEDTPQAFVVLAFAEPKT
SLSAVKKVPEALELKWLSADKGMLVTVNGRLVKTHNLLTGNLSAVESDDPDPLLLGLHLSNTPKFWTRTLDWQPGYHYGY
KAKSEFKLIAEENILINGFPTQALHFSEYVSVDTLNIQYQNDFWLDPQNGNVLKSRQKIAPNLPFIDITLLKPFAA
>Mature_236_residues
MRVYKKLLPFFAISAIIAGLSGCSQRINALNETAKLAFLGSEDVVLPPEQISANPYASIYVKIEDTPQAFVVLAFAEPKT
SLSAVKKVPEALELKWLSADKGMLVTVNGRLVKTHNLLTGNLSAVESDDPDPLLLGLHLSNTPKFWTRTLDWQPGYHYGY
KAKSEFKLIAEENILINGFPTQALHFSEYVSVDTLNIQYQNDFWLDPQNGNVLKSRQKIAPNLPFIDITLLKPFAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjbF [H]

Homologues:

Organism=Escherichia coli, GI1787221, Length=215, Percent_Identity=31.1627906976744, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082360, Length=215, Percent_Identity=31.6279069767442, Blast_Score=87, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021308 [H]

Pfam domain/function: PF11102 DUF2886 [H]

EC number: NA

Molecular weight: Translated: 26248; Mature: 26248

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVYKKLLPFFAISAIIAGLSGCSQRINALNETAKLAFLGSEDVVLPPEQISANPYASIY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEECHHHHCCCCEEEEE
VKIEDTPQAFVVLAFAEPKTSLSAVKKVPEALELKWLSADKGMLVTVNGRLVKTHNLLTG
EEECCCCCEEEEEEECCCCHHHHHHHHCCHHHEEEEEECCCCEEEEECCEEEEEECEEEC
NLSAVESDDPDPLLLGLHLSNTPKFWTRTLDWQPGYHYGYKAKSEFKLIAEENILINGFP
CCEECCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCEEEECCC
TQALHFSEYVSVDTLNIQYQNDFWLDPQNGNVLKSRQKIAPNLPFIDITLLKPFAA
CHHEEHHHEEEEEEEEEEECCCEEECCCCCCEECCHHHHCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MRVYKKLLPFFAISAIIAGLSGCSQRINALNETAKLAFLGSEDVVLPPEQISANPYASIY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEECHHHHCCCCEEEEE
VKIEDTPQAFVVLAFAEPKTSLSAVKKVPEALELKWLSADKGMLVTVNGRLVKTHNLLTG
EEECCCCCEEEEEEECCCCHHHHHHHHCCHHHEEEEEECCCCEEEEECCEEEEEECEEEC
NLSAVESDDPDPLLLGLHLSNTPKFWTRTLDWQPGYHYGYKAKSEFKLIAEENILINGFP
CCEECCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCEEEECCC
TQALHFSEYVSVDTLNIQYQNDFWLDPQNGNVLKSRQKIAPNLPFIDITLLKPFAA
CHHEEHHHEEEEEEEEEEECCCEEECCCCCCEECCHHHHCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]