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The map label for this gene is intZ [H]

Identifier: 117919693

GI number: 117919693

Start: 1458630

End: 1459829

Strand: Direct

Name: intZ [H]

Synonym: Shewana3_1244

Alternate gene names: 117919693

Gene position: 1458630-1459829 (Clockwise)

Preceding gene: 117919692

Following gene: 117919694

Centisome position: 29.34

GC content: 58.83

Gene sequence:

>1200_bases
ATGGCCAAGATCAAGCTCACCAAGTCCGCAATCGATGCGGCAAAACCCCAAGCACAGCCCGTCGAACTGCGTGACACCCT
CGTTCCCGGCTTCCTGTGCAAGATTACACCTGCCGGTCGCAAAGTCTTCATGCTCCAGTATCGGACGAACGCCGGCGAGC
GGCGCAAGCCTGCATTGGGTTTGTACGGAGAATTGACCGTTGAGCAAGCCCGCTCATTGGCACAGAGTTGGTTGGCTGAG
GTACGCCGGGGTGGCGATCCCGGAGCTGCCAAGGCCGAAGCGCGCAAAGCGCCGACGGTCAAGGAACTGTGTGTGAAGTT
CATGGAGGACTACTCCAGGCACCGCAACAAACCCAGCACTCAGAGAGGCTACCAAGGCAATATTGACCGCAACATCATTC
CAATCCTGGGTCGTATGAAGGTACAGGATGTGAAGCGCGCTGACGTGGCGGCGATGATGAAGAAGCTTGACTATAAGCCA
GGCGAGGCTAATAAAGCTCTGTCCGTCCTGCGTAAGATGTTCAACCTTGCTGAGATTTGGGGCTACCGCACGGATGGCTC
TAACCCGTGCCGACACATTCCGCTGTACACCGGCGGCAAGACAACCCGCCTCATTACTGACGAAGAGATGGTCAAGCTAT
TCAAGCACCTTGACCAAATCGAGGCCGAGGGCTTGGTGCCCTATGTCGTCCCGTTGGCGATCCGTCTGCAATTCGAGTTT
GCTGCCCGGCGCTCCGAAATCGTGCTACTCGAATGGGAATGGATTGACCTGGAGAACCGCCGGGTGGTCTGGCCCGACAG
CAAGACCGGTGGTATGTCCAAACCCATGAGCGAGGAAGCCTATCGGCTGCTTTCCACTGCGCCTCGGCAGCCCGGTGCAC
GTTATGTCCTGCCGTCGCCGCGCAACCCGCTTACCCACTTGACCTATGGGGAGTACTACGGCGGTTGGACCCGGACGCTC
AAAGCGGCTGGCGTACCTCACGTTGGCACCCACGGCATCCGCCACCGCTCGGCTACCGACATCGCTAACTCGGGTATCCC
GGTCAAGGTCGGCATGGTGCTGACCGCGCATAAGACGGTGACCATGTTCATGCGCTATATCCACACCGAGGACGATCCGG
TGCGTCAAGCAGCTGAACTGGTGGCGAACCGGCGCAAGACGATTACAGGAGCGTCGCGCGTGAAGGAAACCGCAGTATGA

Upstream 100 bases:

>100_bases
CTAATTCATCATATGCCGGTGCTTTCCGAAACTTGACCCGGCTTCCATCCGTTTGGCTCCTAACAGGCTCCTGGAAACGG
GTCTTTCCAAGGAGTCAGCT

Downstream 100 bases:

>100_bases
GCAGGCTCAATATCGCGGCGTTTCGGTTTGCCGATCCAATAGTCGCAACGCTGTTACGGCTATTGGGCATGGACGGTCTC
TAGGGGCGAGTGGCAACCTG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MAKIKLTKSAIDAAKPQAQPVELRDTLVPGFLCKITPAGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQSWLAE
VRRGGDPGAAKAEARKAPTVKELCVKFMEDYSRHRNKPSTQRGYQGNIDRNIIPILGRMKVQDVKRADVAAMMKKLDYKP
GEANKALSVLRKMFNLAEIWGYRTDGSNPCRHIPLYTGGKTTRLITDEEMVKLFKHLDQIEAEGLVPYVVPLAIRLQFEF
AARRSEIVLLEWEWIDLENRRVVWPDSKTGGMSKPMSEEAYRLLSTAPRQPGARYVLPSPRNPLTHLTYGEYYGGWTRTL
KAAGVPHVGTHGIRHRSATDIANSGIPVKVGMVLTAHKTVTMFMRYIHTEDDPVRQAAELVANRRKTITGASRVKETAV

Sequences:

>Translated_399_residues
MAKIKLTKSAIDAAKPQAQPVELRDTLVPGFLCKITPAGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQSWLAE
VRRGGDPGAAKAEARKAPTVKELCVKFMEDYSRHRNKPSTQRGYQGNIDRNIIPILGRMKVQDVKRADVAAMMKKLDYKP
GEANKALSVLRKMFNLAEIWGYRTDGSNPCRHIPLYTGGKTTRLITDEEMVKLFKHLDQIEAEGLVPYVVPLAIRLQFEF
AARRSEIVLLEWEWIDLENRRVVWPDSKTGGMSKPMSEEAYRLLSTAPRQPGARYVLPSPRNPLTHLTYGEYYGGWTRTL
KAAGVPHVGTHGIRHRSATDIANSGIPVKVGMVLTAHKTVTMFMRYIHTEDDPVRQAAELVANRRKTITGASRVKETAV
>Mature_398_residues
AKIKLTKSAIDAAKPQAQPVELRDTLVPGFLCKITPAGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQSWLAEV
RRGGDPGAAKAEARKAPTVKELCVKFMEDYSRHRNKPSTQRGYQGNIDRNIIPILGRMKVQDVKRADVAAMMKKLDYKPG
EANKALSVLRKMFNLAEIWGYRTDGSNPCRHIPLYTGGKTTRLITDEEMVKLFKHLDQIEAEGLVPYVVPLAIRLQFEFA
ARRSEIVLLEWEWIDLENRRVVWPDSKTGGMSKPMSEEAYRLLSTAPRQPGARYVLPSPRNPLTHLTYGEYYGGWTRTLK
AAGVPHVGTHGIRHRSATDIANSGIPVKVGMVLTAHKTVTMFMRYIHTEDDPVRQAAELVANRRKTITGASRVKETAV

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=366, Percent_Identity=28.1420765027322, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788690, Length=367, Percent_Identity=22.3433242506812, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44802; Mature: 44670

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKIKLTKSAIDAAKPQAQPVELRDTLVPGFLCKITPAGRKVFMLQYRTNAGERRKPALG
CCEEEECHHHHHHCCCCCCCCHHHHHHCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCC
LYGELTVEQARSLAQSWLAEVRRGGDPGAAKAEARKAPTVKELCVKFMEDYSRHRNKPST
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCC
QRGYQGNIDRNIIPILGRMKVQDVKRADVAAMMKKLDYKPGEANKALSVLRKMFNLAEIW
CCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
GYRTDGSNPCRHIPLYTGGKTTRLITDEEMVKLFKHLDQIEAEGLVPYVVPLAIRLQFEF
CCCCCCCCCCCCCCEEECCCEEEEECHHHHHHHHHHHHHHHHCCCCHHEEEEEEEEEEHH
AARRSEIVLLEWEWIDLENRRVVWPDSKTGGMSKPMSEEAYRLLSTAPRQPGARYVLPSP
HCCCCCEEEEEEEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEECCCC
RNPLTHLTYGEYYGGWTRTLKAAGVPHVGTHGIRHRSATDIANSGIPVKVGMVLTAHKTV
CCCCCEEECHHHHCCHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEEEHHHHH
TMFMRYIHTEDDPVRQAAELVANRRKTITGASRVKETAV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCC
>Mature Secondary Structure 
AKIKLTKSAIDAAKPQAQPVELRDTLVPGFLCKITPAGRKVFMLQYRTNAGERRKPALG
CEEEECHHHHHHCCCCCCCCHHHHHHCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCC
LYGELTVEQARSLAQSWLAEVRRGGDPGAAKAEARKAPTVKELCVKFMEDYSRHRNKPST
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCC
QRGYQGNIDRNIIPILGRMKVQDVKRADVAAMMKKLDYKPGEANKALSVLRKMFNLAEIW
CCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
GYRTDGSNPCRHIPLYTGGKTTRLITDEEMVKLFKHLDQIEAEGLVPYVVPLAIRLQFEF
CCCCCCCCCCCCCCEEECCCEEEEECHHHHHHHHHHHHHHHHCCCCHHEEEEEEEEEEHH
AARRSEIVLLEWEWIDLENRRVVWPDSKTGGMSKPMSEEAYRLLSTAPRQPGARYVLPSP
HCCCCCEEEEEEEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEECCCC
RNPLTHLTYGEYYGGWTRTLKAAGVPHVGTHGIRHRSATDIANSGIPVKVGMVLTAHKTV
CCCCCEEECHHHHCCHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEEEHHHHH
TMFMRYIHTEDDPVRQAAELVANRRKTITGASRVKETAV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]