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The map label for this gene is tadA [H]

Identifier: 117919687

GI number: 117919687

Start: 1447605

End: 1448273

Strand: Direct

Name: tadA [H]

Synonym: Shewana3_1238

Alternate gene names: 117919687

Gene position: 1447605-1448273 (Clockwise)

Preceding gene: 117919686

Following gene: 117919689

Centisome position: 29.11

GC content: 51.42

Gene sequence:

>669_bases
GTGGAGCAGACAAAACTGAATCCAAAAACCTTGCATGCGAAGACGCTTAGCTCCGATGAACTTGGCTCTGATGAACTTGG
CTCTGATGAAGCTAGTGGTAATGTGCTAATTGGCGAGCAACCTTGTCTCAATCAAGCGAGTCTCAATCAAGCGGATATTG
AACAAGCTCGAGTCGATGAACATTGGATGCGTGTCGCGATGAGTATGGCTGAAAAGGCCGAAGCAGCGGGTGAAGTACCA
GTGGGGGCGGTTTTAGTCAAAGGTGGTCAGCAAATCGCGGCCGGATATAACTTGTCTATCAGTGAGCACGACCCCTGCGC
CCATGCTGAAATTCAGTGCTTGCGAGCAGCGGGGCAAACGATTGAAAACTATCGACTCCTCGATACCACTCTTTACGTAA
CTCTTGAGCCTTGTGCGATGTGCGCCGGTGCCATGGTGCATAGCCGGATTGCCCGCGTGGTATTTGGGGCGAAAGATGAG
AAGACGGGCGCCGCAGGAACCGTGCTTAATCTCTTGCAGCATCCAGCCTTTAATCATCAAGTTGAGGTCACATCTGGGGT
GTTAGCGCAGGACTGTGCTGACCAATTGAGCCGCTTTTTTAAACGTCGCAGGGAGGAAAAGAAGGCTTTAAAACAGGCTC
AAAAGGCGCAGCAGGGGACGCTATCCTAA

Upstream 100 bases:

>100_bases
TCGAAAGGGCTCAATCCTTACCCAGTGAAGGCGCCAAGTGCGCCTTTTTTATTGGTTATGGGTATAATTGCCTAAATTGT
TGATTGAAGAGAATCCTTAA

Downstream 100 bases:

>100_bases
GGAGTTTGGGGACTCGCCTAAGCGTTAGTCTTGGGCTTGGATAAACGTAAAAAACAGTTTGTGGCGATTCAGCACTCGGC
GATGGCGAATTTTCAGTGTG

Product: tRNA-adenosine deaminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MEQTKLNPKTLHAKTLSSDELGSDELGSDEASGNVLIGEQPCLNQASLNQADIEQARVDEHWMRVAMSMAEKAEAAGEVP
VGAVLVKGGQQIAAGYNLSISEHDPCAHAEIQCLRAAGQTIENYRLLDTTLYVTLEPCAMCAGAMVHSRIARVVFGAKDE
KTGAAGTVLNLLQHPAFNHQVEVTSGVLAQDCADQLSRFFKRRREEKKALKQAQKAQQGTLS

Sequences:

>Translated_222_residues
MEQTKLNPKTLHAKTLSSDELGSDELGSDEASGNVLIGEQPCLNQASLNQADIEQARVDEHWMRVAMSMAEKAEAAGEVP
VGAVLVKGGQQIAAGYNLSISEHDPCAHAEIQCLRAAGQTIENYRLLDTTLYVTLEPCAMCAGAMVHSRIARVVFGAKDE
KTGAAGTVLNLLQHPAFNHQVEVTSGVLAQDCADQLSRFFKRRREEKKALKQAQKAQQGTLS
>Mature_222_residues
MEQTKLNPKTLHAKTLSSDELGSDELGSDEASGNVLIGEQPCLNQASLNQADIEQARVDEHWMRVAMSMAEKAEAAGEVP
VGAVLVKGGQQIAAGYNLSISEHDPCAHAEIQCLRAAGQTIENYRLLDTTLYVTLEPCAMCAGAMVHSRIARVVFGAKDE
KTGAAGTVLNLLQHPAFNHQVEVTSGVLAQDCADQLSRFFKRRREEKKALKQAQKAQQGTLS

Specific function: Deaminates adenosine-34 to inosine in tRNA-Arg2 [H]

COG id: COG0590

COG function: function code FJ; Cytosine/adenosine deaminases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytidine and deoxycytidylate deaminase family [H]

Homologues:

Organism=Homo sapiens, GI124107608, Length=152, Percent_Identity=32.2368421052632, Blast_Score=80, Evalue=1e-15,
Organism=Escherichia coli, GI145693172, Length=157, Percent_Identity=59.2356687898089, Blast_Score=205, Evalue=2e-54,
Organism=Escherichia coli, GI1786616, Length=155, Percent_Identity=32.9032258064516, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17554608, Length=119, Percent_Identity=33.6134453781513, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17541138, Length=148, Percent_Identity=30.4054054054054, Blast_Score=75, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6322425, Length=160, Percent_Identity=33.75, Blast_Score=72, Evalue=9e-14,
Organism=Drosophila melanogaster, GI21355527, Length=146, Percent_Identity=31.5068493150685, Blast_Score=73, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR016193 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1 [H]

EC number: NA

Molecular weight: Translated: 23955; Mature: 23955

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQTKLNPKTLHAKTLSSDELGSDELGSDEASGNVLIGEQPCLNQASLNQADIEQARVDE
CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHH
HWMRVAMSMAEKAEAAGEVPVGAVLVKGGQQIAAGYNLSISEHDPCAHAEIQCLRAAGQT
HHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
IENYRLLDTTLYVTLEPCAMCAGAMVHSRIARVVFGAKDEKTGAAGTVLNLLQHPAFNHQ
HHCEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCE
VEVTSGVLAQDCADQLSRFFKRRREEKKALKQAQKAQQGTLS
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEQTKLNPKTLHAKTLSSDELGSDELGSDEASGNVLIGEQPCLNQASLNQADIEQARVDE
CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHH
HWMRVAMSMAEKAEAAGEVPVGAVLVKGGQQIAAGYNLSISEHDPCAHAEIQCLRAAGQT
HHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
IENYRLLDTTLYVTLEPCAMCAGAMVHSRIARVVFGAKDEKTGAAGTVLNLLQHPAFNHQ
HHCEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCE
VEVTSGVLAQDCADQLSRFFKRRREEKKALKQAQKAQQGTLS
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]