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The map label for this gene is yeeY [H]

Identifier: 117919672

GI number: 117919672

Start: 1425280

End: 1426242

Strand: Direct

Name: yeeY [H]

Synonym: Shewana3_1223

Alternate gene names: 117919672

Gene position: 1425280-1426242 (Clockwise)

Preceding gene: 117919669

Following gene: 117919675

Centisome position: 28.66

GC content: 50.88

Gene sequence:

>963_bases
TTGACCTTGCTGAAAGAAAATCGGAACCTTTTCAAGGTTTATTTCAAAAAAATTGAACAAGAGGTGGCTATGTTACCTGT
GATGAGTCTCGATGGATTGATAGTGCTCGATGCTATTGATAAGAAAGGCAGTTTTTCGGCAGCGGCCGAGTCCTTATTCC
GAGTACCATCGGCGTTGACCTACACAGTGCAGAAATTAGAGAGCGACTTAGGGGTAAAATTATTTGAACGTAAGGGCCAG
CGCGCCGAGCTAACCTTAGTTGGCCAGTTGGTATTACGCCAAGGGCGGGAGATTTTAGCCGCCACCGCAAGGCTTGAAGA
GGCGGTTCGGCAACTCGAAACGGGCTGGGAGTCGGCGTTAACCTTAGCGATTGATACTGTGGTGCCCGATTTGCCACTGT
TAAAACTGATTGCTGAATTTACCGAGTTAGGTAAACAGGTGACTATTAATATCACTGAGGAGTCATTAGGTGGCGGTTGG
GATGCGCTGTATTCGGGCCGCGCCGATATTGCCATTGGGGTCACCGGAGAGTTACCAAAGGGGCAATATCACTTAGTCGA
AATCGGCATGCTTGAATTCGTGTTTGCCCTAGCGCCTCACCATCCCTTAGCACAGTTTGACCATCCCATCCCGACCGAAG
CCTTGTTGCAATTTCCCTCCGTGGTGGTGGCCGATAGCTCGACGGCGCTCGCGCAGCGCTCCAGTGGATTATTTGATAGT
CGCCAAGTTATTCGTGTGCCGAACATGCAGACCAAGATTAAAGCCCAGCAACTTGGACTGGGTGTGGGTTATCTTCCCAA
GCATTTGATCCGCGAAGAACTCGCTTCAGGCGCATTAGTTGCGTGCAAGGTTGAGATCCCAAGACCGGCGCAGCCAGTGT
TTCTCGCGTGGCGCAAGGGAAATCAAGGCAAAGCGCAGGCGTGGTTTGCCGAACGTTTACCCCATTGCGACTGGTTGTTT
TAG

Upstream 100 bases:

>100_bases
TTCATGGGATGTTCCTTAATTCAAATTTTTTAACTATGTCGTTAATGGGTTAGTCGGTGGAGGCTTAGCGTTAATTTCTC
CATTGGTTTAAAGTTTAGTC

Downstream 100 bases:

>100_bases
TGAGATGTAAAGAGCACATGTTGATGTGGATTGAATTAATCACAGTACTTAACCCATTGGCTAAGTACTGTGATTAATTA
AGAGGACAGAGTTAAGAGGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MTLLKENRNLFKVYFKKIEQEVAMLPVMSLDGLIVLDAIDKKGSFSAAAESLFRVPSALTYTVQKLESDLGVKLFERKGQ
RAELTLVGQLVLRQGREILAATARLEEAVRQLETGWESALTLAIDTVVPDLPLLKLIAEFTELGKQVTINITEESLGGGW
DALYSGRADIAIGVTGELPKGQYHLVEIGMLEFVFALAPHHPLAQFDHPIPTEALLQFPSVVVADSSTALAQRSSGLFDS
RQVIRVPNMQTKIKAQQLGLGVGYLPKHLIREELASGALVACKVEIPRPAQPVFLAWRKGNQGKAQAWFAERLPHCDWLF

Sequences:

>Translated_320_residues
MTLLKENRNLFKVYFKKIEQEVAMLPVMSLDGLIVLDAIDKKGSFSAAAESLFRVPSALTYTVQKLESDLGVKLFERKGQ
RAELTLVGQLVLRQGREILAATARLEEAVRQLETGWESALTLAIDTVVPDLPLLKLIAEFTELGKQVTINITEESLGGGW
DALYSGRADIAIGVTGELPKGQYHLVEIGMLEFVFALAPHHPLAQFDHPIPTEALLQFPSVVVADSSTALAQRSSGLFDS
RQVIRVPNMQTKIKAQQLGLGVGYLPKHLIREELASGALVACKVEIPRPAQPVFLAWRKGNQGKAQAWFAERLPHCDWLF
>Mature_319_residues
TLLKENRNLFKVYFKKIEQEVAMLPVMSLDGLIVLDAIDKKGSFSAAAESLFRVPSALTYTVQKLESDLGVKLFERKGQR
AELTLVGQLVLRQGREILAATARLEEAVRQLETGWESALTLAIDTVVPDLPLLKLIAEFTELGKQVTINITEESLGGGWD
ALYSGRADIAIGVTGELPKGQYHLVEIGMLEFVFALAPHHPLAQFDHPIPTEALLQFPSVVVADSSTALAQRSSGLFDSR
QVIRVPNMQTKIKAQQLGLGVGYLPKHLIREELASGALVACKVEIPRPAQPVFLAWRKGNQGKAQAWFAERLPHCDWLF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=285, Percent_Identity=40, Blast_Score=218, Evalue=5e-58,
Organism=Escherichia coli, GI1787949, Length=283, Percent_Identity=35.6890459363958, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI1789492, Length=288, Percent_Identity=33.3333333333333, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI1786508, Length=295, Percent_Identity=29.4915254237288, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1786713, Length=270, Percent_Identity=32.5925925925926, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI87082132, Length=261, Percent_Identity=23.7547892720307, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081904, Length=277, Percent_Identity=28.5198555956679, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI145693105, Length=232, Percent_Identity=25.4310344827586, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35289; Mature: 35158

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLLKENRNLFKVYFKKIEQEVAMLPVMSLDGLIVLDAIDKKGSFSAAAESLFRVPSALT
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCHHHH
YTVQKLESDLGVKLFERKGQRAELTLVGQLVLRQGREILAATARLEEAVRQLETGWESAL
HHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCHHHHH
TLAIDTVVPDLPLLKLIAEFTELGKQVTINITEESLGGGWDALYSGRADIAIGVTGELPK
HHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEEHHCCCCCHHHHHCCCCCEEEEECCCCCC
GQYHLVEIGMLEFVFALAPHHPLAQFDHPIPTEALLQFPSVVVADSSTALAQRSSGLFDS
CCEEEEEHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHCCCEEEECCCHHHHHHCCCCCCC
RQVIRVPNMQTKIKAQQLGLGVGYLPKHLIREELASGALVACKVEIPRPAQPVFLAWRKG
CCEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEECC
NQGKAQAWFAERLPHCDWLF
CCCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TLLKENRNLFKVYFKKIEQEVAMLPVMSLDGLIVLDAIDKKGSFSAAAESLFRVPSALT
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCHHHH
YTVQKLESDLGVKLFERKGQRAELTLVGQLVLRQGREILAATARLEEAVRQLETGWESAL
HHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCHHHHH
TLAIDTVVPDLPLLKLIAEFTELGKQVTINITEESLGGGWDALYSGRADIAIGVTGELPK
HHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEEHHCCCCCHHHHHCCCCCEEEEECCCCCC
GQYHLVEIGMLEFVFALAPHHPLAQFDHPIPTEALLQFPSVVVADSSTALAQRSSGLFDS
CCEEEEEHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHCCCEEEECCCHHHHHHCCCCCCC
RQVIRVPNMQTKIKAQQLGLGVGYLPKHLIREELASGALVACKVEIPRPAQPVFLAWRKG
CCEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEECC
NQGKAQAWFAERLPHCDWLF
CCCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]