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The map label for this gene is yddQ [H]

Identifier: 117919603

GI number: 117919603

Start: 1361248

End: 1361793

Strand: Direct

Name: yddQ [H]

Synonym: Shewana3_1154

Alternate gene names: 117919603

Gene position: 1361248-1361793 (Clockwise)

Preceding gene: 117919600

Following gene: 117919605

Centisome position: 27.38

GC content: 49.82

Gene sequence:

>546_bases
ATGGATAACATGAGCTTGCCTAAAACTGCGCTGTTAATTATTGATATGCAGCAGGGACTGTTTTACGCCGATGCGCCGCC
CTTTAATCGGGAACAGGTGCTAAATAATATCAATCTGTTAATTGCCAACGCCCGCGAGGCAGGGGCACCGATTTGGGCGG
TTCGCCATACCGGGCCGGAAGGTTCACCCATTGCTGCCGGAACGGCAAATTGGCAATTGATAGAATCCTTAGCGATTAAT
CCGCAGCTGGATAATATCTTTGATAAAACTAAGCCAAGTTGTTTTTATCAAACCGGATTTGCAGAGGCGTTAACCCATGA
GGGGATCAGCGAGCTGGTGATAGTGGGGATGAAAACCCAGTATTGTATCGATACCAATTGCCGGATTGCGGCTGAACTTG
GCTGGCAGGTGGTGTTAGCCGACGATGCGCACACTTGTATGGATACGGCGCAGCTCTCGGCTGAGGCGATTATTGCTCAC
CACAATGCCACGCTCCAAGGCGCCTTTGTGCGTTTAGCTAAGAGTGCGGATATCGTATTTCGTTGA

Upstream 100 bases:

>100_bases
GTGCGTAGCGATTTGTGCTTCAAAAAATCGATTACTCAACCCCGCCCAAAGTGGCGGGGTTGTTTTTTCCGTCTTTTGGG
CAATAACGCTGGAGAATGTG

Downstream 100 bases:

>100_bases
TGCCAACAAACAAAAACGCAGCCCTTAGGCTGCGTTTTTTGATATCAGAATCAACTTATTCTTGAATGTCTGCGTTGTGA
TACACGTTTTGTACGTCGTC

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MDNMSLPKTALLIIDMQQGLFYADAPPFNREQVLNNINLLIANAREAGAPIWAVRHTGPEGSPIAAGTANWQLIESLAIN
PQLDNIFDKTKPSCFYQTGFAEALTHEGISELVIVGMKTQYCIDTNCRIAAELGWQVVLADDAHTCMDTAQLSAEAIIAH
HNATLQGAFVRLAKSADIVFR

Sequences:

>Translated_181_residues
MDNMSLPKTALLIIDMQQGLFYADAPPFNREQVLNNINLLIANAREAGAPIWAVRHTGPEGSPIAAGTANWQLIESLAIN
PQLDNIFDKTKPSCFYQTGFAEALTHEGISELVIVGMKTQYCIDTNCRIAAELGWQVVLADDAHTCMDTAQLSAEAIIAH
HNATLQGAFVRLAKSADIVFR
>Mature_181_residues
MDNMSLPKTALLIIDMQQGLFYADAPPFNREQVLNNINLLIANAREAGAPIWAVRHTGPEGSPIAAGTANWQLIESLAIN
PQLDNIFDKTKPSCFYQTGFAEALTHEGISELVIVGMKTQYCIDTNCRIAAELGWQVVLADDAHTCMDTAQLSAEAIIAH
HNATLQGAFVRLAKSADIVFR

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

Organism=Escherichia coli, GI87081992, Length=186, Percent_Identity=25.2688172043011, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 19723; Mature: 19723

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNMSLPKTALLIIDMQQGLFYADAPPFNREQVLNNINLLIANAREAGAPIWAVRHTGPE
CCCCCCCCEEEEEEECCCCEEEECCCCCCHHHHHCCCEEEEEECCCCCCCEEEEEECCCC
GSPIAAGTANWQLIESLAINPQLDNIFDKTKPSCFYQTGFAEALTHEGISELVIVGMKTQ
CCCEECCCCCHHHHHHEECCCCHHHHHHCCCCCEEEECCHHHHHHHCCCCCEEEECCCCE
YCIDTNCRIAAELGWQVVLADDAHTCMDTAQLSAEAIIAHHNATLQGAFVRLAKSADIVF
EEECCCCEEEEECCEEEEEECCCHHHHHHHHHCCEEEEEECCCCHHHHHHEEECCCCEEE
R
C
>Mature Secondary Structure
MDNMSLPKTALLIIDMQQGLFYADAPPFNREQVLNNINLLIANAREAGAPIWAVRHTGPE
CCCCCCCCEEEEEEECCCCEEEECCCCCCHHHHHCCCEEEEEECCCCCCCEEEEEECCCC
GSPIAAGTANWQLIESLAINPQLDNIFDKTKPSCFYQTGFAEALTHEGISELVIVGMKTQ
CCCEECCCCCHHHHHHEECCCCHHHHHHCCCCCEEEECCHHHHHHHCCCCCEEEECCCCE
YCIDTNCRIAAELGWQVVLADDAHTCMDTAQLSAEAIIAHHNATLQGAFVRLAKSADIVF
EEECCCCEEEEECCEEEEEECCCHHHHHHHHHCCEEEEEECCCCHHHHHHEEECCCCEEE
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]