Click here to switch to the map view.

The map label for this gene is recA [H]

Identifier: 117919575

GI number: 117919575

Start: 1326397

End: 1327470

Strand: Direct

Name: recA [H]

Synonym: Shewana3_1126

Alternate gene names: 117919575

Gene position: 1326397-1327470 (Clockwise)

Preceding gene: 117919573

Following gene: 117919576

Centisome position: 26.68

GC content: 46.83

Gene sequence:

>1074_bases
ATGAAAGTCGATCCAAACAAAGAGAAAGCACTTGCTGCGGTATTGAGCCAAATTGAAAAGCAATTTGGTAAAGGCTCCAT
CATGAAGCTGGGCGAAGACCGCTCTATGGATGTTGAGACTATTTCTACTGGTTCACTTTCCCTTGACGTCGCCTTAGGGG
CTGGCGGTTTACCAATGGGACGTATCGTTGAGATCTATGGTCCCGAATCATCAGGTAAAACGACGCTGACATTAGAAGTG
ATTGCCGCTGCTCAGCGCGAAGGTAAAACCTGTGCCTTTATCGATGCCGAGCACGCGCTAGACCCTATCTATGCTAAAAA
GTTAGGCGTAGATATCGATAACTTACTGTGTTCACAACCCGATACCGGCGAACAAGCCCTTGAGATCTGTGATGCGTTAA
CCCGTTCTGGCGCGGTAGATGTGATCATCGTTGACTCGGTTGCGGCATTAACACCCAAAGCAGAAATTGAAGGTGAAATT
GGTGACTCACACATGGGCCTAGCGGCGCGTATGATGAGCCAAGCGATGCGTAAGCTCGCGGGTAACCTCAAGCAATCGAA
TACACTATTAATCTTCATTAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACAACGGGCGGTA
ACGCGCTGAAGTTCTACGCTTCTGTTCGTCTCGATATTCGCCGTACTGGTGCTATCAAAGAAGGCGATGAAGTGGTGGGT
AACGAGACGCGCGTTAAAGTGGTTAAAAACAAGGTTGCCGCGCCGTTTAAACAAGCTGAGTTCCAAATTCTTTACGGTCA
AGGTATCAACCGTACTGGTGAGTTAGTCGATTTAGGTGTTGCCCATAAACTGATTGAAAAAGCCGGTGCATGGTACAGCT
ACAAGGGTGACAAGATTGGTCAAGGTCGTGCAAATGCCGGTAAATATCTGACTGAAAACCCAGCAATTGCCGCTGAAATC
GATAAAACACTGCGTGAGTTACTGCTGAGTAACCCAAGCGCTATGTCTTCATCTTCATCTGATGATGAAAACAGCGAAGG
CAATGTTGATTTCGAAACAGGCGAAGTATTCTGA

Upstream 100 bases:

>100_bases
AGCAGATTATGACAAAGAGCCTCGCTTTTTGTATTACCCGCTTTATTAAATTGAATATCACTTTTGACAGTACTGATACT
GTCTAGATGAGGGAACAGGA

Downstream 100 bases:

>100_bases
GCCAGTCTGCCCGTCAAATCGCGGTCGCGCTGTTAGCGCGCCGCGACTATTCCCGCCAAGAAATCCGCTCCAAACTGCTC
GAAAAAGGCTTTGAGGTCGT

Product: recombinase A

Products: NA

Alternate protein names: Recombinase A [H]

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MKVDPNKEKALAAVLSQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG
NETRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGRANAGKYLTENPAIAAEI
DKTLRELLLSNPSAMSSSSSDDENSEGNVDFETGEVF

Sequences:

>Translated_357_residues
MKVDPNKEKALAAVLSQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG
NETRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGRANAGKYLTENPAIAAEI
DKTLRELLLSNPSAMSSSSSDDENSEGNVDFETGEVF
>Mature_357_residues
MKVDPNKEKALAAVLSQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG
NETRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGRANAGKYLTENPAIAAEI
DKTLRELLLSNPSAMSSSSSDDENSEGNVDFETGEVF

Specific function: Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with lexA causing its activation

COG id: COG0468

COG function: function code L; RecA/RadA recombinase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family [H]

Homologues:

Organism=Escherichia coli, GI1789051, Length=353, Percent_Identity=85.8356940509915, Blast_Score=617, Evalue=1e-178,

Paralogues:

None

Copy number: 1548 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 800-1200 (L-broth) 40,000-60,000 (L-broth + Nalidixate) 4,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013765
- InterPro:   IPR020584
- InterPro:   IPR020588
- InterPro:   IPR020587 [H]

Pfam domain/function: PF00154 RecA [H]

EC number: NA

Molecular weight: Translated: 38145; Mature: 38145

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS00321 RECA_1 ; PS50162 RECA_2 ; PS50163 RECA_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVDPNKEKALAAVLSQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMG
CCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCEEEEEEECCCCCCCC
RIVEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQP
CEEEEECCCCCCCEEEEEEEEEHHHCCCCEEEEEEHHHHCCHHHHHHHCCCHHHHHCCCC
DTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA
CCHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHHH
GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG
CCCCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCHHCC
NETRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIG
CCCEEEEHHHHHCCCCHHCCEEEEECCCCCCCCCEEHHHHHHHHHHHHCCEEEECCCCCC
QGRANAGKYLTENPAIAAEIDKTLRELLLSNPSAMSSSSSDDENSEGNVDFETGEVF
CCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCC
>Mature Secondary Structure
MKVDPNKEKALAAVLSQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMG
CCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCEEEEEEECCCCCCCC
RIVEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQP
CEEEEECCCCCCCEEEEEEEEEHHHCCCCEEEEEEHHHHCCHHHHHHHCCCHHHHHCCCC
DTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA
CCHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHHH
GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG
CCCCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCHHCC
NETRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIG
CCCEEEEHHHHHCCCCHHCCEEEEECCCCCCCCCEEHHHHHHHHHHHHCCEEEECCCCCC
QGRANAGKYLTENPAIAAEIDKTLRELLLSNPSAMSSSSSDDENSEGNVDFETGEVF
CCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]