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The map label for this gene is nlpD [H]

Identifier: 117919572

GI number: 117919572

Start: 1321357

End: 1322253

Strand: Direct

Name: nlpD [H]

Synonym: Shewana3_1123

Alternate gene names: 117919572

Gene position: 1321357-1322253 (Clockwise)

Preceding gene: 117919571

Following gene: 117919573

Centisome position: 26.57

GC content: 42.36

Gene sequence:

>897_bases
TTGTTGAATGTGGGTTTACTCTTAAACCTCAGTTTAGTGTTGTTGCTTGCGGGCTGTAGCTTTCAGGCGAGTCGCCCCGC
ACCTGTCGAAAGTCTTTCCCACAGTTATTCCAAACATAACAAAGGCCACATTAAATCTAATTCATATAAAGTTAAGAAAG
GTGACACCCTTTACTCGATCTCTTGGGCTGCAGGTAAAGATTTCGCCGAAATTGCTAAAATTAATCAATTAGATAAATCG
TACACCATCTACCCTGGACAGATTCTATATTTAACGAATGATCGCGGGCAAAATGGCAAAGGCTCTACAACTTTAGGTGG
AAGTAATTCAGCGTCTAAAGGACAAAATAAAGCTAATTCTGTTGATAAACAATCAGCTAGTAACAATTCATCCGCGAAAA
ACTTGTCAAGTGAACAGCAGAAAAAAACACTTGATCAGAAAGCCAAGCCTGCGTATTCTGCAACAAGCTCTCAACAAAGT
ATTAACCCTTCGATCGTCGCCCCGACATCAACACTGCCAGACAGTGTGAGTCAGTGGCAATGGCCAGTAAGAGGTAAATT
GATTGGGACATACTCTGCCAATGAGCAGGGAAATAAAGGAATTAAGATCGCAGGAAAACGCGGAGATATCATCAAAGCCG
CTGCAGATGGGCGGGTGGTATACGCAGGTAGTGCTCTTAGGGGTTATGGTAATTTAGTGATTATTAAACATAGTGACGAT
TACCTTAGTGCCTATGCTCATGCAGATCAGATCTTAGTCGAAGAAAAGCAACATGTCCTCGCTGGACAGACAGTTGCAAA
AATGGGCAGTACAGGTACTAATCAGGTAATGCTTCGCTTCGAGATCCGTTACCACGGTCAGTCTGTTAACCCACTTAACT
ATTTACCTAAGCAATGA

Upstream 100 bases:

>100_bases
TGGCGAGCTCGCTTAAGTTTTTAGCTTTAGGTCACTTCGTTAAATACTTTAACTTTATAATTAGGTAAAACAGTAAGATA
GCCCTAAAGAGGAGTTTTTA

Downstream 100 bases:

>100_bases
TTGTTTAGGGCCTTGTTGGCATGGAGGATAAAAAATTGCAGTAATTCAAGCAGTTTACATTAGGTTTGGGAGATTTGATC
ATGAGCCGCATAAATAGCAC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MLNVGLLLNLSLVLLLAGCSFQASRPAPVESLSHSYSKHNKGHIKSNSYKVKKGDTLYSISWAAGKDFAEIAKINQLDKS
YTIYPGQILYLTNDRGQNGKGSTTLGGSNSASKGQNKANSVDKQSASNNSSAKNLSSEQQKKTLDQKAKPAYSATSSQQS
INPSIVAPTSTLPDSVSQWQWPVRGKLIGTYSANEQGNKGIKIAGKRGDIIKAAADGRVVYAGSALRGYGNLVIIKHSDD
YLSAYAHADQILVEEKQHVLAGQTVAKMGSTGTNQVMLRFEIRYHGQSVNPLNYLPKQ

Sequences:

>Translated_298_residues
MLNVGLLLNLSLVLLLAGCSFQASRPAPVESLSHSYSKHNKGHIKSNSYKVKKGDTLYSISWAAGKDFAEIAKINQLDKS
YTIYPGQILYLTNDRGQNGKGSTTLGGSNSASKGQNKANSVDKQSASNNSSAKNLSSEQQKKTLDQKAKPAYSATSSQQS
INPSIVAPTSTLPDSVSQWQWPVRGKLIGTYSANEQGNKGIKIAGKRGDIIKAAADGRVVYAGSALRGYGNLVIIKHSDD
YLSAYAHADQILVEEKQHVLAGQTVAKMGSTGTNQVMLRFEIRYHGQSVNPLNYLPKQ
>Mature_298_residues
MLNVGLLLNLSLVLLLAGCSFQASRPAPVESLSHSYSKHNKGHIKSNSYKVKKGDTLYSISWAAGKDFAEIAKINQLDKS
YTIYPGQILYLTNDRGQNGKGSTTLGGSNSASKGQNKANSVDKQSASNNSSAKNLSSEQQKKTLDQKAKPAYSATSSQQS
INPSIVAPTSTLPDSVSQWQWPVRGKLIGTYSANEQGNKGIKIAGKRGDIIKAAADGRVVYAGSALRGYGNLVIIKHSDD
YLSAYAHADQILVEEKQHVLAGQTVAKMGSTGTNQVMLRFEIRYHGQSVNPLNYLPKQ

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=294, Percent_Identity=41.156462585034, Blast_Score=205, Evalue=3e-54,
Organism=Escherichia coli, GI87082174, Length=298, Percent_Identity=37.5838926174497, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI87082297, Length=148, Percent_Identity=37.8378378378378, Blast_Score=81, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 32074; Mature: 32074

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNVGLLLNLSLVLLLAGCSFQASRPAPVESLSHSYSKHNKGHIKSNSYKVKKGDTLYSI
CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCEEEEE
SWAAGKDFAEIAKINQLDKSYTIYPGQILYLTNDRGQNGKGSTTLGGSNSASKGQNKANS
EECCCCCHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCHHHH
VDKQSASNNSSAKNLSSEQQKKTLDQKAKPAYSATSSQQSINPSIVAPTSTLPDSVSQWQ
HHHHCCCCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCC
WPVRGKLIGTYSANEQGNKGIKIAGKRGDIIKAAADGRVVYAGSALRGYGNLVIIKHSDD
CCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEECCCEEEEECCEECCCCCEEEEEECCH
YLSAYAHADQILVEEKQHVLAGQTVAKMGSTGTNQVMLRFEIRYHGQSVNPLNYLPKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MLNVGLLLNLSLVLLLAGCSFQASRPAPVESLSHSYSKHNKGHIKSNSYKVKKGDTLYSI
CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCEEEEE
SWAAGKDFAEIAKINQLDKSYTIYPGQILYLTNDRGQNGKGSTTLGGSNSASKGQNKANS
EECCCCCHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCHHHH
VDKQSASNNSSAKNLSSEQQKKTLDQKAKPAYSATSSQQSINPSIVAPTSTLPDSVSQWQ
HHHHCCCCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCC
WPVRGKLIGTYSANEQGNKGIKIAGKRGDIIKAAADGRVVYAGSALRGYGNLVIIKHSDD
CCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEECCCEEEEECCEECCCCCEEEEEECCH
YLSAYAHADQILVEEKQHVLAGQTVAKMGSTGTNQVMLRFEIRYHGQSVNPLNYLPKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]