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The map label for this gene is yhjC [H]

Identifier: 117919555

GI number: 117919555

Start: 1300340

End: 1301239

Strand: Direct

Name: yhjC [H]

Synonym: Shewana3_1106

Alternate gene names: 117919555

Gene position: 1300340-1301239 (Clockwise)

Preceding gene: 117919551

Following gene: 117919559

Centisome position: 26.15

GC content: 47.44

Gene sequence:

>900_bases
ATGGCTGATGATATAGGCGCCGAGCTGCAGTTAATTTATCTGTTTGTGCATTTAGTGAATGCGGGGAGTTTTTCCCAAGC
GGCTAAAGAGCTCGATATGCCCATCGCCACTGTGAGCCGCAAGCTGGCCAAACTTGAGGAGAAACTCGATAAGCAATTGT
TTATGCGTAGCACTCGTAAGCTGCGGTTAACCGAAGAAGGTCTAGCTTTATTTCAACGCTACCAGAGTGTCATTGCCCAA
TTTGATGAACTCAGTGGTGTTGGCAGTGATAAGCCCGAAGGAACATTGCGAATAGCTGCGCCGATTTCGATTATCTCCAT
CATCTTTATCCGTGCACTGAACGAATTTGGGCGTTTATATCCCGATATTCGCCTGCATATTTCCCAAAGCAATGAGTTGG
TGGATTTGATCGATAAAGGGATCGATGTGGCGATTGTGGGCGGTGCCCAGCCCGATTCCTCTTGGGTGTCGAGCACCTTA
GGCGAACTCGATTACCGCCTGTTTGCGACGCCGGAATATTTAGCCTCGGCGCCTAAGTTAACCCATCCCGATGATCTTGA
AGCCCATCAGTTAATTAAAGTGTGGCCACTGTTTAACTGGCACTTAAAGCACTCGAATGGCGAGTCGTTTTATTTTAATG
GCCCGACAAAACTCACGCTCACGGATCTACACGGGGCGATTCAGGCGACTCTCGATCACGGCGGCATTCTCTATGGCCCA
GAATTATTTGTAAAACAGCAGATTAAAGAGGGACAGTTAAAAGTACTCTTGCCCGAATGGATAGGTGAGCAGCGCAGAAT
ATCGATTTTGTATCACCAGCGGAGTCAGCAGCCGCTAAAGGTAAAAGTATTTATAGAGTTTATGCAGTCTAAGGCGCCCG
AGCTGTTTTCGATGATTTAA

Upstream 100 bases:

>100_bases
TTGCGCTATGGTCGTAGAAGTGAATAATTCTACGTTTAAAACACAATGAGTTAGTGCATAGTCTGAATGCAAGCACTCAC
ATAAACAATTGGGATAGAAA

Downstream 100 bases:

>100_bases
GCTCGTTAGCGTTTGCGGGGTTTTAGCGGATTTTTACTCATGGAGTTTTGGGTCTGTTTCGCCTCTTGTAGGCTAGCGCG
GGTGGCGGGCACAATCCCCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MADDIGAELQLIYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEGLALFQRYQSVIAQ
FDELSGVGSDKPEGTLRIAAPISIISIIFIRALNEFGRLYPDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTL
GELDYRLFATPEYLASAPKLTHPDDLEAHQLIKVWPLFNWHLKHSNGESFYFNGPTKLTLTDLHGAIQATLDHGGILYGP
ELFVKQQIKEGQLKVLLPEWIGEQRRISILYHQRSQQPLKVKVFIEFMQSKAPELFSMI

Sequences:

>Translated_299_residues
MADDIGAELQLIYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEGLALFQRYQSVIAQ
FDELSGVGSDKPEGTLRIAAPISIISIIFIRALNEFGRLYPDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTL
GELDYRLFATPEYLASAPKLTHPDDLEAHQLIKVWPLFNWHLKHSNGESFYFNGPTKLTLTDLHGAIQATLDHGGILYGP
ELFVKQQIKEGQLKVLLPEWIGEQRRISILYHQRSQQPLKVKVFIEFMQSKAPELFSMI
>Mature_298_residues
ADDIGAELQLIYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEGLALFQRYQSVIAQF
DELSGVGSDKPEGTLRIAAPISIISIIFIRALNEFGRLYPDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTLG
ELDYRLFATPEYLASAPKLTHPDDLEAHQLIKVWPLFNWHLKHSNGESFYFNGPTKLTLTDLHGAIQATLDHGGILYGPE
LFVKQQIKEGQLKVLLPEWIGEQRRISILYHQRSQQPLKVKVFIEFMQSKAPELFSMI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=289, Percent_Identity=30.1038062283737, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI1789639, Length=283, Percent_Identity=28.6219081272085, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=29.2682926829268, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=26.643598615917, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI87081978, Length=300, Percent_Identity=28.6666666666667, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789440, Length=288, Percent_Identity=25.3472222222222, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788706, Length=263, Percent_Identity=28.5171102661597, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=23.469387755102, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1786448, Length=257, Percent_Identity=28.4046692607004, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1789173, Length=281, Percent_Identity=24.5551601423488, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI145693105, Length=155, Percent_Identity=30.3225806451613, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787806, Length=145, Percent_Identity=28.9655172413793, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33739; Mature: 33608

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADDIGAELQLIYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRK
CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
LRLTEEGLALFQRYQSVIAQFDELSGVGSDKPEGTLRIAAPISIISIIFIRALNEFGRLY
EEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHC
PDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTLGELDYRLFATPEYLASAPKL
CCEEEEECCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCHHHHHCCCCC
THPDDLEAHQLIKVWPLFNWHLKHSNGESFYFNGPTKLTLTDLHGAIQATLDHGGILYGP
CCCCCCCHHHHHHHCCCEEEEEECCCCCEEEECCCCEEEEEHHHHHHHHHHCCCCEEECH
ELFVKQQIKEGQLKVLLPEWIGEQRRISILYHQRSQQPLKVKVFIEFMQSKAPELFSMI
HHHHHHHHCCCCEEEEEHHHCCCCCEEEEEEECCCCCCEEHHHHHHHHHCCCCHHHHCC
>Mature Secondary Structure 
ADDIGAELQLIYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRK
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
LRLTEEGLALFQRYQSVIAQFDELSGVGSDKPEGTLRIAAPISIISIIFIRALNEFGRLY
EEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHC
PDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTLGELDYRLFATPEYLASAPKL
CCEEEEECCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCHHHHHCCCCC
THPDDLEAHQLIKVWPLFNWHLKHSNGESFYFNGPTKLTLTDLHGAIQATLDHGGILYGP
CCCCCCCHHHHHHHCCCEEEEEECCCCCEEEECCCCEEEEEHHHHHHHHHHCCCCEEECH
ELFVKQQIKEGQLKVLLPEWIGEQRRISILYHQRSQQPLKVKVFIEFMQSKAPELFSMI
HHHHHHHHCCCCEEEEEHHHCCCCCEEEEEEECCCCCCEEHHHHHHHHHCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]