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The map label for this gene is yciR [C]

Identifier: 117919519

GI number: 117919519

Start: 1255491

End: 1257017

Strand: Direct

Name: yciR [C]

Synonym: Shewana3_1070

Alternate gene names: 117919519

Gene position: 1255491-1257017 (Clockwise)

Preceding gene: 117919518

Following gene: 117919522

Centisome position: 25.25

GC content: 48.98

Gene sequence:

>1527_bases
ATGGTTATTCTGGGATTTATCGGTTTAGCACTGGGCATCATCTTGATAGCCGTGCTTTATATATTACTCGCTAGATACCA
AGCGCTGCGGTTACAGCAGCGATTTTTGGCGCAATTATGCCCGCAGCTCGATCAGCAAAAGATTGAACGCCGTCCTTTGA
ATGTACCTGTGGTGCCGCAGGAGTTTGCACCGCTTTACCATTCCTTAAACGAGATGCTCGCAGCGCTGCCTGCGGGCATG
GGTAAGGATAAACTCACAGGGTTGAATAACCGTGTCGGGCTTAAGCGTTCACTGACCGCATTGATGCCCATCACCCAAGG
CACTTTAGTGCTTATCGATATTTATCGCTTTCGCTATGTAAATGATCTCTTTGGTTTTGTGTTTGGCGATATTCTGCTTA
AACAGTTTGCCGAGCGCTTAACCAGTCTAAGCCTTAAACCTAAGTTGATTGCGCGCCTAAACGGCGATGAGTTTTTCCTC
TATTACGAGCAAAGTCTGTCCGAGGAGCAACTGCTGCATTTACGCGGTCGACTACAGGTGCCCTTTAAAATTAAAGATAC
CCCCGTCAGTGTGCGGATGCAGATTGGGTGTCTGCAACTTGCTAAGCATCATGCCGATGTCAGCCATATGCTCAGAAGGC
TGGATCTTGCCCTTAAAAAGGCCCGCGCGACCCGTAGCGCCATCGCCTGTTACAGTGAGAATGATGATATCCGCCAATTG
AGGGAGCTTAAGATTATCGACAGCCTTCCCAGTGGTTTGCAGCGAAATCATCTGTATATGGTGTATCAGCCTAAGCAGGA
TATTCACACGGGCGCCTGCACCCAAGTCGAAGCCTTGATCCGTTGGGAGCATGAGGAGCTCGGGTTTATTTCCCCCGGAG
AATTTATTCCGCTGGCAGAGTGCGCCGGGATGATCGATTTAGTGAGCAATTGGGCGCTGGAGCAAGTGTTACAGCAGCAG
GTAAAGTGGCGTGCGGCGGGCGTGTCTGTGTGTGTGGCGCTTAATCTCTCGACTCGAGATCTCGACAGTGAAACTTTGCC
CCATGATATCGCGACTCGCCTCGAGCATTATAAATTACCGCCAGAATGCTTGATGATTGAGATCACCGAGAGCACTCTGA
TGGCCGATTTAAACAAGGCCGTGGATACTTTAGAACAGATCCGTCGTCTTGGGGTGAAATTGGCAATCGATGACTTTGGT
ACGGGTCATTCATCGCTGGCGTATTTAAAGCATTTACCCGCCAATGAAGTCAAAATTGATAAAGCCTTTCTTCGGGATCT
AGAGCCTAATCAGCCTTCAGAATATATCCTTGAGGCCAGCATTAATATTGCGAAAAAGCTCGGCTATGAGGTGACGGTCG
AAGGGGTTGAGACCCTTAATATCCACGATATGTTAGTGAAGATGGGCGTCGACCGTATTCAAGGGATTTTTTATGCCAAG
CCGATGCGGGCCGCAGAGCTTGAAATGAACTGGAACCAGCTAAGACCCAGACCCGAAATGCTCTGCGTTAATGGTTCACA
TCCTTAG

Upstream 100 bases:

>100_bases
GAGAGTTACCAGTAGTCGTAGGGCCTATAGGGAAGCCATTCTTGCCCTGAGTCAGGGGAGAATGGTGGTTAAGCTTACGT
GGTAAGATTGAGGCCAAATT

Downstream 100 bases:

>100_bases
ACTAAGCTTTACATCCCTAGGCTTAATTGGGCGATTAAGTCGGCGGGCATGGGCGCAAGTTGGCGCGCCTGATTCATACA
CACCATTTCAATGGTGGCGG

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 508; Mature: 508

Protein sequence:

>508_residues
MVILGFIGLALGIILIAVLYILLARYQALRLQQRFLAQLCPQLDQQKIERRPLNVPVVPQEFAPLYHSLNEMLAALPAGM
GKDKLTGLNNRVGLKRSLTALMPITQGTLVLIDIYRFRYVNDLFGFVFGDILLKQFAERLTSLSLKPKLIARLNGDEFFL
YYEQSLSEEQLLHLRGRLQVPFKIKDTPVSVRMQIGCLQLAKHHADVSHMLRRLDLALKKARATRSAIACYSENDDIRQL
RELKIIDSLPSGLQRNHLYMVYQPKQDIHTGACTQVEALIRWEHEELGFISPGEFIPLAECAGMIDLVSNWALEQVLQQQ
VKWRAAGVSVCVALNLSTRDLDSETLPHDIATRLEHYKLPPECLMIEITESTLMADLNKAVDTLEQIRRLGVKLAIDDFG
TGHSSLAYLKHLPANEVKIDKAFLRDLEPNQPSEYILEASINIAKKLGYEVTVEGVETLNIHDMLVKMGVDRIQGIFYAK
PMRAAELEMNWNQLRPRPEMLCVNGSHP

Sequences:

>Translated_508_residues
MVILGFIGLALGIILIAVLYILLARYQALRLQQRFLAQLCPQLDQQKIERRPLNVPVVPQEFAPLYHSLNEMLAALPAGM
GKDKLTGLNNRVGLKRSLTALMPITQGTLVLIDIYRFRYVNDLFGFVFGDILLKQFAERLTSLSLKPKLIARLNGDEFFL
YYEQSLSEEQLLHLRGRLQVPFKIKDTPVSVRMQIGCLQLAKHHADVSHMLRRLDLALKKARATRSAIACYSENDDIRQL
RELKIIDSLPSGLQRNHLYMVYQPKQDIHTGACTQVEALIRWEHEELGFISPGEFIPLAECAGMIDLVSNWALEQVLQQQ
VKWRAAGVSVCVALNLSTRDLDSETLPHDIATRLEHYKLPPECLMIEITESTLMADLNKAVDTLEQIRRLGVKLAIDDFG
TGHSSLAYLKHLPANEVKIDKAFLRDLEPNQPSEYILEASINIAKKLGYEVTVEGVETLNIHDMLVKMGVDRIQGIFYAK
PMRAAELEMNWNQLRPRPEMLCVNGSHP
>Mature_508_residues
MVILGFIGLALGIILIAVLYILLARYQALRLQQRFLAQLCPQLDQQKIERRPLNVPVVPQEFAPLYHSLNEMLAALPAGM
GKDKLTGLNNRVGLKRSLTALMPITQGTLVLIDIYRFRYVNDLFGFVFGDILLKQFAERLTSLSLKPKLIARLNGDEFFL
YYEQSLSEEQLLHLRGRLQVPFKIKDTPVSVRMQIGCLQLAKHHADVSHMLRRLDLALKKARATRSAIACYSENDDIRQL
RELKIIDSLPSGLQRNHLYMVYQPKQDIHTGACTQVEALIRWEHEELGFISPGEFIPLAECAGMIDLVSNWALEQVLQQQ
VKWRAAGVSVCVALNLSTRDLDSETLPHDIATRLEHYKLPPECLMIEITESTLMADLNKAVDTLEQIRRLGVKLAIDDFG
TGHSSLAYLKHLPANEVKIDKAFLRDLEPNQPSEYILEASINIAKKLGYEVTVEGVETLNIHDMLVKMGVDRIQGIFYAK
PMRAAELEMNWNQLRPRPEMLCVNGSHP

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=413, Percent_Identity=30.7506053268765, Blast_Score=204, Evalue=1e-53,
Organism=Escherichia coli, GI87081921, Length=412, Percent_Identity=29.8543689320388, Blast_Score=168, Evalue=8e-43,
Organism=Escherichia coli, GI1790496, Length=252, Percent_Identity=35.7142857142857, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI226510982, Length=439, Percent_Identity=27.7904328018223, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1788849, Length=245, Percent_Identity=30.6122448979592, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI87081743, Length=247, Percent_Identity=30.7692307692308, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788502, Length=233, Percent_Identity=30.4721030042918, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1786507, Length=245, Percent_Identity=28.5714285714286, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI87081980, Length=231, Percent_Identity=30.3030303030303, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI1787055, Length=274, Percent_Identity=28.1021897810219, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI87081845, Length=228, Percent_Identity=30.7017543859649, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI87082096, Length=250, Percent_Identity=26.4, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87081977, Length=122, Percent_Identity=37.7049180327869, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1787410, Length=122, Percent_Identity=27.0491803278689, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 57601; Mature: 57601

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVILGFIGLALGIILIAVLYILLARYQALRLQQRFLAQLCPQLDQQKIERRPLNVPVVPQ
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCH
EFAPLYHSLNEMLAALPAGMGKDKLTGLNNRVGLKRSLTALMPITQGTLVLIDIYRFRYV
HHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHH
NDLFGFVFGDILLKQFAERLTSLSLKPKLIARLNGDEFFLYYEQSLSEEQLLHLRGRLQV
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEECCCEEEEEECCCCCHHHHHHHCCCEEC
PFKIKDTPVSVRMQIGCLQLAKHHADVSHMLRRLDLALKKARATRSAIACYSENDDIRQL
CEEECCCCEEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHH
RELKIIDSLPSGLQRNHLYMVYQPKQDIHTGACTQVEALIRWEHEELGFISPGEFIPLAE
HHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCHHHCCCCCCCCCCCHHH
CAGMIDLVSNWALEQVLQQQVKWRAAGVSVCVALNLSTRDLDSETLPHDIATRLEHYKLP
HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCC
PECLMIEITESTLMADLNKAVDTLEQIRRLGVKLAIDDFGTGHSSLAYLKHLPANEVKID
CHHEEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCEEHH
KAFLRDLEPNQPSEYILEASINIAKKLGYEVTVEGVETLNIHDMLVKMGVDRIQGIFYAK
HHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEECCHHHHHHHHCHHHHHHHHEEC
PMRAAELEMNWNQLRPRPEMLCVNGSHP
CCCHHEEECCHHHCCCCCCEEEECCCCC
>Mature Secondary Structure
MVILGFIGLALGIILIAVLYILLARYQALRLQQRFLAQLCPQLDQQKIERRPLNVPVVPQ
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCH
EFAPLYHSLNEMLAALPAGMGKDKLTGLNNRVGLKRSLTALMPITQGTLVLIDIYRFRYV
HHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHH
NDLFGFVFGDILLKQFAERLTSLSLKPKLIARLNGDEFFLYYEQSLSEEQLLHLRGRLQV
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEECCCEEEEEECCCCCHHHHHHHCCCEEC
PFKIKDTPVSVRMQIGCLQLAKHHADVSHMLRRLDLALKKARATRSAIACYSENDDIRQL
CEEECCCCEEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHH
RELKIIDSLPSGLQRNHLYMVYQPKQDIHTGACTQVEALIRWEHEELGFISPGEFIPLAE
HHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCHHHCCCCCCCCCCCHHH
CAGMIDLVSNWALEQVLQQQVKWRAAGVSVCVALNLSTRDLDSETLPHDIATRLEHYKLP
HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCC
PECLMIEITESTLMADLNKAVDTLEQIRRLGVKLAIDDFGTGHSSLAYLKHLPANEVKID
CHHEEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCEEHH
KAFLRDLEPNQPSEYILEASINIAKKLGYEVTVEGVETLNIHDMLVKMGVDRIQGIFYAK
HHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEECCHHHHHHHHCHHHHHHHHEEC
PMRAAELEMNWNQLRPRPEMLCVNGSHP
CCCHHEEECCHHHCCCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]