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The map label for this gene is yjcD [H]

Identifier: 117919507

GI number: 117919507

Start: 1240579

End: 1241931

Strand: Direct

Name: yjcD [H]

Synonym: Shewana3_1058

Alternate gene names: 117919507

Gene position: 1240579-1241931 (Clockwise)

Preceding gene: 117919502

Following gene: 117919512

Centisome position: 24.95

GC content: 52.7

Gene sequence:

>1353_bases
ATGTCTGAGCAATTGAGTTCAACAGCCGTACCCTCTGGTTCGTTTCTGGACCGTTTTTTTTCAATTCAACAACGTGGTAG
CACAGTTCGCCAAGAAGTGATTGCAGGGTTAACCACTTTCCTCGCTATGGTGTACTCAGTGATTGTGGTACCCAATATGT
TAGGCAAAGCGAGATTCGATCCCGGCGCCGTGTTCGTCGCCACCTGTTTAATTGCCTCCTTTGGCTCGCTGCTGATGGGA
CTCTGGGCGAATCTACCCATGGCCATTGGTTGTGCGATTTCACTCACCGCCTTTACTGCCTTCGGCTTAGTGTTAGGTCA
GGGCATGAGTATCCCTGTGACCTTAGGCGCCATCTTTTGGATGGGGGTGATCTTTACCGTCGTGAGCGTCACGGGCGTGC
GTCAATGGGTGTTGGCTAACCTACCCAAGGGGATTGCCCATGGTACAGGTATAGGTATTGGCTTGTTTTTACTCTTAATT
GCCACTAACAGTGTGCAGTTGATTGTGGCCAATGACGCGGGTCTGCCAGTGAAGTTAGGCGACATTAACAGCTTGCCCGT
TATCGCTACCGTACTGGGGTTAGCGGCCACTATCGGTTTAGAGCGTCGCGGTGTACCCGGCGGGATTTTATTGGTGATTA
TTGGCCTATCCCTGTTCGGTTTAGTGTTTGACCCAAGCGTGACATTCCAAGGTTTCTTCGCCGTTCCTGATTTTACCTCT
GAGCACTCGCTGATTGGTCAAATGGATATTATGGGCGCCTTGAATCCTGTGGTATTACCGATTGTGCTGGCGCTGGTGAT
GACGGCGATTTTTGATGCCACGGGCACCATCCGCGCGGTCGCGGGGCAAGCCAATCTGCTGGATAAAGACGATAATATCG
TCGGCGGTGGCAAGGCATTAACGTCAGATTCTGTCAGCAGCATGTTTGCGGGTATCGTTGGTGGCGCCCCTGCGGCCGTG
TATATCGAATCGGCGGCGGGTACGGCGGCGGGCGGTAAGACGGGCTTAACCGCGACCATAGTGGGCGGTTTATTCCTGCT
GATGGTGTTTTTAGCACCGCTCAGCTATTTAGTGCCTGCCTATGCGACGGCGCCTGCGCTGATGTACGTGGGGCTATTGA
TGCTCAGCAATGTGACTAAGCTGGACTTTAACGATAAGGTCGATGCGATGGCGGGCTTAACCTGCGCCGTATTCATCATC
CTCAGCTGTAACATTGTGACCGGTATTATGCTTGGCTTTGTGACCTTAGTGGTTGGCCGTATTTTTAGCGGTGAAATCCG
TCAGCTTAAGTTAGGCGTGCTCGCGATTACGCTAGGCCTGGTGGCCTTCTATATGGGCGGCTGGGCGATCTAG

Upstream 100 bases:

>100_bases
TCATTGGATTTGGGGCTCTAATCTGCCGCAGCCAGCGTCGCCAATGGTTAAGCCAATTGGTATCGACCCTATTTTAAGAG
ATCACAAGGTATAACAAGAT

Downstream 100 bases:

>100_bases
TTTATAAAGTTGAAAGCGAGTGCCGTTAGCACTCGCTTTCATTGACCTCATTGTGTTCACAATAGGCTCGCAGCAAATCC
TTCCAAGTCACAATCCCGAC

Product: xanthine/uracil/vitamin C permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 449

Protein sequence:

>450_residues
MSEQLSSTAVPSGSFLDRFFSIQQRGSTVRQEVIAGLTTFLAMVYSVIVVPNMLGKARFDPGAVFVATCLIASFGSLLMG
LWANLPMAIGCAISLTAFTAFGLVLGQGMSIPVTLGAIFWMGVIFTVVSVTGVRQWVLANLPKGIAHGTGIGIGLFLLLI
ATNSVQLIVANDAGLPVKLGDINSLPVIATVLGLAATIGLERRGVPGGILLVIIGLSLFGLVFDPSVTFQGFFAVPDFTS
EHSLIGQMDIMGALNPVVLPIVLALVMTAIFDATGTIRAVAGQANLLDKDDNIVGGGKALTSDSVSSMFAGIVGGAPAAV
YIESAAGTAAGGKTGLTATIVGGLFLLMVFLAPLSYLVPAYATAPALMYVGLLMLSNVTKLDFNDKVDAMAGLTCAVFII
LSCNIVTGIMLGFVTLVVGRIFSGEIRQLKLGVLAITLGLVAFYMGGWAI

Sequences:

>Translated_450_residues
MSEQLSSTAVPSGSFLDRFFSIQQRGSTVRQEVIAGLTTFLAMVYSVIVVPNMLGKARFDPGAVFVATCLIASFGSLLMG
LWANLPMAIGCAISLTAFTAFGLVLGQGMSIPVTLGAIFWMGVIFTVVSVTGVRQWVLANLPKGIAHGTGIGIGLFLLLI
ATNSVQLIVANDAGLPVKLGDINSLPVIATVLGLAATIGLERRGVPGGILLVIIGLSLFGLVFDPSVTFQGFFAVPDFTS
EHSLIGQMDIMGALNPVVLPIVLALVMTAIFDATGTIRAVAGQANLLDKDDNIVGGGKALTSDSVSSMFAGIVGGAPAAV
YIESAAGTAAGGKTGLTATIVGGLFLLMVFLAPLSYLVPAYATAPALMYVGLLMLSNVTKLDFNDKVDAMAGLTCAVFII
LSCNIVTGIMLGFVTLVVGRIFSGEIRQLKLGVLAITLGLVAFYMGGWAI
>Mature_449_residues
SEQLSSTAVPSGSFLDRFFSIQQRGSTVRQEVIAGLTTFLAMVYSVIVVPNMLGKARFDPGAVFVATCLIASFGSLLMGL
WANLPMAIGCAISLTAFTAFGLVLGQGMSIPVTLGAIFWMGVIFTVVSVTGVRQWVLANLPKGIAHGTGIGIGLFLLLIA
TNSVQLIVANDAGLPVKLGDINSLPVIATVLGLAATIGLERRGVPGGILLVIIGLSLFGLVFDPSVTFQGFFAVPDFTSE
HSLIGQMDIMGALNPVVLPIVLALVMTAIFDATGTIRAVAGQANLLDKDDNIVGGGKALTSDSVSSMFAGIVGGAPAAVY
IESAAGTAAGGKTGLTATIVGGLFLLMVFLAPLSYLVPAYATAPALMYVGLLMLSNVTKLDFNDKVDAMAGLTCAVFIIL
SCNIVTGIMLGFVTLVVGRIFSGEIRQLKLGVLAITLGLVAFYMGGWAI

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790499, Length=449, Percent_Identity=71.9376391982183, Blast_Score=625, Evalue=1e-180,
Organism=Escherichia coli, GI48994909, Length=450, Percent_Identity=73.3333333333333, Blast_Score=620, Evalue=1e-179,
Organism=Escherichia coli, GI87082309, Length=421, Percent_Identity=39.4299287410926, Blast_Score=275, Evalue=4e-75,
Organism=Escherichia coli, GI1790150, Length=438, Percent_Identity=38.1278538812785, Blast_Score=263, Evalue=1e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 46390; Mature: 46259

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQLSSTAVPSGSFLDRFFSIQQRGSTVRQEVIAGLTTFLAMVYSVIVVPNMLGKARFD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PGAVFVATCLIASFGSLLMGLWANLPMAIGCAISLTAFTAFGLVLGQGMSIPVTLGAIFW
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
MGVIFTVVSVTGVRQWVLANLPKGIAHGTGIGIGLFLLLIATNSVQLIVANDAGLPVKLG
HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEC
DINSLPVIATVLGLAATIGLERRGVPGGILLVIIGLSLFGLVFDPSVTFQGFFAVPDFTS
CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC
EHSLIGQMDIMGALNPVVLPIVLALVMTAIFDATGTIRAVAGQANLLDKDDNIVGGGKAL
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHEECCCCCCCCCCCCEECCCCCC
TSDSVSSMFAGIVGGAPAAVYIESAAGTAAGGKTGLTATIVGGLFLLMVFLAPLSYLVPA
CHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YATAPALMYVGLLMLSNVTKLDFNDKVDAMAGLTCAVFIILSCNIVTGIMLGFVTLVVGR
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFSGEIRQLKLGVLAITLGLVAFYMGGWAI
HHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SEQLSSTAVPSGSFLDRFFSIQQRGSTVRQEVIAGLTTFLAMVYSVIVVPNMLGKARFD
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PGAVFVATCLIASFGSLLMGLWANLPMAIGCAISLTAFTAFGLVLGQGMSIPVTLGAIFW
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
MGVIFTVVSVTGVRQWVLANLPKGIAHGTGIGIGLFLLLIATNSVQLIVANDAGLPVKLG
HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEC
DINSLPVIATVLGLAATIGLERRGVPGGILLVIIGLSLFGLVFDPSVTFQGFFAVPDFTS
CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC
EHSLIGQMDIMGALNPVVLPIVLALVMTAIFDATGTIRAVAGQANLLDKDDNIVGGGKAL
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHEECCCCCCCCCCCCEECCCCCC
TSDSVSSMFAGIVGGAPAAVYIESAAGTAAGGKTGLTATIVGGLFLLMVFLAPLSYLVPA
CHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YATAPALMYVGLLMLSNVTKLDFNDKVDAMAGLTCAVFIILSCNIVTGIMLGFVTLVVGR
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFSGEIRQLKLGVLAITLGLVAFYMGGWAI
HHCCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]