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The map label for this gene is torR [H]

Identifier: 117919500

GI number: 117919500

Start: 1230325

End: 1231035

Strand: Direct

Name: torR [H]

Synonym: Shewana3_1051

Alternate gene names: 117919500

Gene position: 1230325-1231035 (Clockwise)

Preceding gene: 117919498

Following gene: 117919502

Centisome position: 24.74

GC content: 48.1

Gene sequence:

>711_bases
ATGGCCTATAGTGTGCTCGTTGTCGATGATGAAGCGGTGATTCGTGCTCGATTGAAAGGGTATTTTGAAAAAGAAGGTTA
CCGCGTTGTCGAGGCGGCCGATGGCGAGCAGATGTGGCACGAGTTTAATCGTCAACATATTGATTTGATTATGTTAGACA
TTAACCTGCCTGGAGTAGATGGCTTAAGCTTAACCCGTGAGTTACGTAGCCGCTCCCATGTGGGGATTATCTTAGTCTCG
GGCCGTGATGAATCAATTGATAAAATCGTTGGTCTGGAGATGGGCGCCGATGATTATGTGACTAAGCCCTTCGAGCTGCG
GGAGCTATTGGTTAGGGTTAAAAACCTACTGTGGCGGATTTCTCTGGTAAAACAAGCCGAACAAGCGCTGGTGCAGGAAT
TATCCGAGCCCGATGATGTGATGAGTTTTGAAGGTTATCGGCTCGAGTTAAACAGCCGTAAGCTGCGCCAAGGGGAGGAG
CTTATCAAGCTCACTAAGGCCGAATTTGAGTTGTTAACCGCCTTTGCTTTGCATCCGCAGCAGGTACTTTCCCGTGAGCG
CTTAATGCAGCAAACCAGTCATCGTAATCAGGATGTGAATGACAGAACCATAGATGTCATCATCCGTCGCCTGCGTAATA
AGCTCAATCCCGAACTCTTTGTCACAGTCCATGGTGAGGGCTATTTGTTTGCCGCTAAGGTGGATGACTAA

Upstream 100 bases:

>100_bases
GTGCCAGAAAGTAACGGAGATCGCATATTTTACCTTTTCCTCATATGCAAATATGAAAAAGTATGAATAATTCAGTTAAG
CAAAATAAGAGATGTAGAAC

Downstream 100 bases:

>100_bases
TCTCTAACTAAATATTGTGTTGAGCGTTGAGTTAATCGCTATGTAAAGCGCTCAGGGGCGCACTTGATACAAGGGATAAA
AATCCGCTTCGGCGAGGCTA

Product: DNA-binding transcriptional regulator TorR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MAYSVLVVDDEAVIRARLKGYFEKEGYRVVEAADGEQMWHEFNRQHIDLIMLDINLPGVDGLSLTRELRSRSHVGIILVS
GRDESIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRISLVKQAEQALVQELSEPDDVMSFEGYRLELNSRKLRQGEE
LIKLTKAEFELLTAFALHPQQVLSRERLMQQTSHRNQDVNDRTIDVIIRRLRNKLNPELFVTVHGEGYLFAAKVDD

Sequences:

>Translated_236_residues
MAYSVLVVDDEAVIRARLKGYFEKEGYRVVEAADGEQMWHEFNRQHIDLIMLDINLPGVDGLSLTRELRSRSHVGIILVS
GRDESIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRISLVKQAEQALVQELSEPDDVMSFEGYRLELNSRKLRQGEE
LIKLTKAEFELLTAFALHPQQVLSRERLMQQTSHRNQDVNDRTIDVIIRRLRNKLNPELFVTVHGEGYLFAAKVDD
>Mature_235_residues
AYSVLVVDDEAVIRARLKGYFEKEGYRVVEAADGEQMWHEFNRQHIDLIMLDINLPGVDGLSLTRELRSRSHVGIILVSG
RDESIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRISLVKQAEQALVQELSEPDDVMSFEGYRLELNSRKLRQGEEL
IKLTKAEFELLTAFALHPQQVLSRERLMQQTSHRNQDVNDRTIDVIIRRLRNKLNPELFVTVHGEGYLFAAKVDD

Specific function: Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide (TMAO). Phosphorylated torR activates the transcription of the torCAD operon by binding to four decameric boxes located in the torCAD p

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1787229, Length=235, Percent_Identity=54.0425531914894, Blast_Score=241, Evalue=3e-65,
Organism=Escherichia coli, GI1790863, Length=239, Percent_Identity=42.2594142259414, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1789809, Length=234, Percent_Identity=41.025641025641, Blast_Score=167, Evalue=7e-43,
Organism=Escherichia coli, GI1786599, Length=240, Percent_Identity=37.5, Blast_Score=153, Evalue=9e-39,
Organism=Escherichia coli, GI1788394, Length=233, Percent_Identity=36.0515021459227, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI1786911, Length=232, Percent_Identity=34.9137931034483, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787375, Length=232, Percent_Identity=34.4827586206897, Blast_Score=120, Evalue=5e-29,
Organism=Escherichia coli, GI1790860, Length=231, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1786784, Length=231, Percent_Identity=35.4978354978355, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI145693140, Length=240, Percent_Identity=32.0833333333333, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082012, Length=232, Percent_Identity=30.6034482758621, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI2367329, Length=244, Percent_Identity=34.4262295081967, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1790552, Length=230, Percent_Identity=29.1304347826087, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1789402, Length=230, Percent_Identity=30, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1788550, Length=122, Percent_Identity=34.4262295081967, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788713, Length=114, Percent_Identity=35.0877192982456, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27273; Mature: 27142

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSVLVVDDEAVIRARLKGYFEKEGYRVVEAADGEQMWHEFNRQHIDLIMLDINLPGVD
CCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCEEEEEEEEECCCCCC
GLSLTRELRSRSHVGIILVSGRDESIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRI
HHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
SLVKQAEQALVQELSEPDDVMSFEGYRLELNSRKLRQGEELIKLTKAEFELLTAFALHPQ
HHHHHHHHHHHHHCCCCCHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCHH
QVLSRERLMQQTSHRNQDVNDRTIDVIIRRLRNKLNPELFVTVHGEGYLFAAKVDD
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECC
>Mature Secondary Structure 
AYSVLVVDDEAVIRARLKGYFEKEGYRVVEAADGEQMWHEFNRQHIDLIMLDINLPGVD
CEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCEEEEEEEEECCCCCC
GLSLTRELRSRSHVGIILVSGRDESIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRI
HHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
SLVKQAEQALVQELSEPDDVMSFEGYRLELNSRKLRQGEELIKLTKAEFELLTAFALHPQ
HHHHHHHHHHHHHCCCCCHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCHH
QVLSRERLMQQTSHRNQDVNDRTIDVIIRRLRNKLNPELFVTVHGEGYLFAAKVDD
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]