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The map label for this gene is ompK [H]

Identifier: 117919489

GI number: 117919489

Start: 1216736

End: 1217575

Strand: Direct

Name: ompK [H]

Synonym: Shewana3_1040

Alternate gene names: 117919489

Gene position: 1216736-1217575 (Clockwise)

Preceding gene: 117919488

Following gene: 117919490

Centisome position: 24.47

GC content: 45.24

Gene sequence:

>840_bases
ATGAAAAACGTTAAAACTTTAGCTTTAGCTGCTACAGCAGTAGCTGCAATGTCTGGTAACGCATTTGCTGCAGACCGTTC
AGACCTTCACGGTTCTGACTACAAGTGGATGCAGTTCAACGCTATGTACTCTATCGGCGAAAAGCCTGATAACCCAGCTT
CTGGCGACCAACACAACTACTTAGAAATGGAGTTCGGCGGCCGTTCTGGTATTTTCGATCTGTATGGTTATGTTGACGTA
TTCAACTTAGCAAACGAGAACACCAAAGACGGTGACAAGAACCCAGGTTCAGGCACCAGCAAACTGTTCATGAAATTTGC
TCCACGTGTTTCTATCGATGCATTAACTGGTAAAGATTTATCTTTCGGTCCAGTACAAGAAGTTTACTTCTCTACTCTGT
TCAACTGGGACGGTCTGAACGGTGAAGGCGTTAACTCTACTTTCTGGGGTGTTGGTGCTGACGTAAACGTGCCTTGGTTA
GGCAAAACAGGTATGAACCTGTACGGTTATTACGACATGAACGCGAAAGAGTGGAACGGTTACCAATTCTCTGCTAACTG
GTTCAAGCCTTTCTACTTCTTCGACAACAAGAGCTTCCTGTCATTCCAAGGTTACATCGATTACCAATTCGGTGCTGACG
AAGACAAGACTGCTTTCGTACCAAAAACCTCTAACGGTGGTAACATCTTCTTCGGTCTATACTGGCACTCAGATCGTTAC
GCTCTGGGCTATGGCTTGAAAGGCTTCAAAGACGTTTACCTGTTAGAAGACGGTGCTGGTGCACTGGCTCTAGAATCAAC
AGGTTGGTCTCACTACCTGTCAGCTACTTACAAGTTCTAA

Upstream 100 bases:

>100_bases
TACGCCAGATTATTGAGATTTTTTTTAATCGAGGTAGAATGCGAGCGCCACAAAAAGAACGCTACCCTTGACGGTAGCAA
ACAAAATAATGGGGTTGATG

Downstream 100 bases:

>100_bases
TTTCTTGTAAAAGCCGTTGGAGCCGCGATGGCGGCTCCATCTTTTATGTGTCATGAATCTTTATCTAAACCCATTTATAA
TTTGAGCAGTGCGTTTATAT

Product: nucleoside-specific channel-forming protein, Tsx

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MKNVKTLALAATAVAAMSGNAFAADRSDLHGSDYKWMQFNAMYSIGEKPDNPASGDQHNYLEMEFGGRSGIFDLYGYVDV
FNLANENTKDGDKNPGSGTSKLFMKFAPRVSIDALTGKDLSFGPVQEVYFSTLFNWDGLNGEGVNSTFWGVGADVNVPWL
GKTGMNLYGYYDMNAKEWNGYQFSANWFKPFYFFDNKSFLSFQGYIDYQFGADEDKTAFVPKTSNGGNIFFGLYWHSDRY
ALGYGLKGFKDVYLLEDGAGALALESTGWSHYLSATYKF

Sequences:

>Translated_279_residues
MKNVKTLALAATAVAAMSGNAFAADRSDLHGSDYKWMQFNAMYSIGEKPDNPASGDQHNYLEMEFGGRSGIFDLYGYVDV
FNLANENTKDGDKNPGSGTSKLFMKFAPRVSIDALTGKDLSFGPVQEVYFSTLFNWDGLNGEGVNSTFWGVGADVNVPWL
GKTGMNLYGYYDMNAKEWNGYQFSANWFKPFYFFDNKSFLSFQGYIDYQFGADEDKTAFVPKTSNGGNIFFGLYWHSDRY
ALGYGLKGFKDVYLLEDGAGALALESTGWSHYLSATYKF
>Mature_279_residues
MKNVKTLALAATAVAAMSGNAFAADRSDLHGSDYKWMQFNAMYSIGEKPDNPASGDQHNYLEMEFGGRSGIFDLYGYVDV
FNLANENTKDGDKNPGSGTSKLFMKFAPRVSIDALTGKDLSFGPVQEVYFSTLFNWDGLNGEGVNSTFWGVGADVNVPWL
GKTGMNLYGYYDMNAKEWNGYQFSANWFKPFYFFDNKSFLSFQGYIDYQFGADEDKTAFVPKTSNGGNIFFGLYWHSDRY
ALGYGLKGFKDVYLLEDGAGALALESTGWSHYLSATYKF

Specific function: Serves as receptor for a broad-host-range vibriophage, KVP40 [H]

COG id: COG3248

COG function: function code M; Nucleoside-binding outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli tsx [H]

Homologues:

Organism=Escherichia coli, GI1786612, Length=242, Percent_Identity=34.7107438016529, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003055
- InterPro:   IPR018013 [H]

Pfam domain/function: PF03502 Channel_Tsx [H]

EC number: NA

Molecular weight: Translated: 31094; Mature: 31094

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNVKTLALAATAVAAMSGNAFAADRSDLHGSDYKWMQFNAMYSIGEKPDNPASGDQHNY
CCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCE
LEMEFGGRSGIFDLYGYVDVFNLANENTKDGDKNPGSGTSKLFMKFAPRVSIDALTGKDL
EEEEECCCCCCCHHHHHHEEEECCCCCCCCCCCCCCCCHHHHHEEECCCEEEEEECCCCC
SFGPVQEVYFSTLFNWDGLNGEGVNSTFWGVGADVNVPWLGKTGMNLYGYYDMNAKEWNG
CCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCC
YQFSANWFKPFYFFDNKSFLSFQGYIDYQFGADEDKTAFVPKTSNGGNIFFGLYWHSDRY
EEEECCCEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCEEEEEEEEECCCE
ALGYGLKGFKDVYLLEDGAGALALESTGWSHYLSATYKF
EEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECC
>Mature Secondary Structure
MKNVKTLALAATAVAAMSGNAFAADRSDLHGSDYKWMQFNAMYSIGEKPDNPASGDQHNY
CCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCE
LEMEFGGRSGIFDLYGYVDVFNLANENTKDGDKNPGSGTSKLFMKFAPRVSIDALTGKDL
EEEEECCCCCCCHHHHHHEEEECCCCCCCCCCCCCCCCHHHHHEEECCCEEEEEECCCCC
SFGPVQEVYFSTLFNWDGLNGEGVNSTFWGVGADVNVPWLGKTGMNLYGYYDMNAKEWNG
CCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCC
YQFSANWFKPFYFFDNKSFLSFQGYIDYQFGADEDKTAFVPKTSNGGNIFFGLYWHSDRY
EEEECCCEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCEEEEEEEEECCCE
ALGYGLKGFKDVYLLEDGAGALALESTGWSHYLSATYKF
EEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]