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The map label for this gene is asnC [H]

Identifier: 117919250

GI number: 117919250

Start: 921368

End: 921862

Strand: Reverse

Name: asnC [H]

Synonym: Shewana3_0798

Alternate gene names: 117919250

Gene position: 921862-921368 (Counterclockwise)

Preceding gene: 117919251

Following gene: 117919249

Centisome position: 18.54

GC content: 47.07

Gene sequence:

>495_bases
ATGACAATTCATTATGTTATAGAGAGTTTATTTATGGAAACCGCATTTCAGCGCGATCAGCTTGATAACCATATCCTCGA
AGCCTTAATGCAAGACGCGCGCACACCTTTTGCCGAACTTGCCAAACGTTTCGGCGTGAGTGCGGGTACCATTCATGTGC
GTGTCGAGAAAATGAAACAAGCGGGGATTATCACGGGTGCCCAGATCACCATCAATCCCAAGGCACTGGGTTACGATGTC
TGCTGTTTTATTGGAATTAATCTCAAAAGTGCTGGCGACTACCCCGCCGCCATCGCCAAGCTAAACGCCCTAGAAGAAGT
GGTTGAAGCCTACTATACCACTGGCAACTACAGCATTTTTGTCAAAGTCATGTGCCAATCCATCGATGGCCTGCAACATG
TGCTGATTAACCGCATCCAATCAATCGACGAAATTCAATCGACTGAAACCCTGATCAGCCTGCAAAACCCGATTACACGG
GCAGTAAAGCCTTAA

Upstream 100 bases:

>100_bases
CCAATGCTTCCTTTTGTGAGCCAGAAGGTGAGCAATGATCACTAAAAACAATAAAAACACCTAAAAGCAGTAGCCATTCA
CCATAAAAGAACGTAACTTT

Downstream 100 bases:

>100_bases
TCAACCCACGAATATAAAGCCCAACAAACAGAACGATATATTGCAAAAGTATGACTTAAGTCTTTTTTACTTCAAAAGTG
TTAACCGTACGATATTTTTG

Product: DNA-binding transcriptional regulator AsnC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MTIHYVIESLFMETAFQRDQLDNHILEALMQDARTPFAELAKRFGVSAGTIHVRVEKMKQAGIITGAQITINPKALGYDV
CCFIGINLKSAGDYPAAIAKLNALEEVVEAYYTTGNYSIFVKVMCQSIDGLQHVLINRIQSIDEIQSTETLISLQNPITR
AVKP

Sequences:

>Translated_164_residues
MTIHYVIESLFMETAFQRDQLDNHILEALMQDARTPFAELAKRFGVSAGTIHVRVEKMKQAGIITGAQITINPKALGYDV
CCFIGINLKSAGDYPAAIAKLNALEEVVEAYYTTGNYSIFVKVMCQSIDGLQHVLINRIQSIDEIQSTETLISLQNPITR
AVKP
>Mature_163_residues
TIHYVIESLFMETAFQRDQLDNHILEALMQDARTPFAELAKRFGVSAGTIHVRVEKMKQAGIITGAQITINPKALGYDVC
CFIGINLKSAGDYPAAIAKLNALEEVVEAYYTTGNYSIFVKVMCQSIDGLQHVLINRIQSIDEIQSTETLISLQNPITRA
VKP

Specific function: Activator of asnA transcription; autogenous regulator of its own transcription; and repressor of the expression of gidA at a post-transcriptional level [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=146, Percent_Identity=77.3972602739726, Blast_Score=236, Evalue=6e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 18190; Mature: 18059

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIHYVIESLFMETAFQRDQLDNHILEALMQDARTPFAELAKRFGVSAGTIHVRVEKMKQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEHHHHHH
AGIITGAQITINPKALGYDVCCFIGINLKSAGDYPAAIAKLNALEEVVEAYYTTGNYSIF
CCCEECCEEEECCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHH
VKVMCQSIDGLQHVLINRIQSIDEIQSTETLISLQNPITRAVKP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TIHYVIESLFMETAFQRDQLDNHILEALMQDARTPFAELAKRFGVSAGTIHVRVEKMKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEHHHHHH
AGIITGAQITINPKALGYDVCCFIGINLKSAGDYPAAIAKLNALEEVVEAYYTTGNYSIF
CCCEECCEEEECCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHH
VKVMCQSIDGLQHVLINRIQSIDEIQSTETLISLQNPITRAVKP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]