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The map label for this gene is lptC [H]

Identifier: 117919127

GI number: 117919127

Start: 794811

End: 795371

Strand: Reverse

Name: lptC [H]

Synonym: Shewana3_0675

Alternate gene names: 117919127

Gene position: 795371-794811 (Counterclockwise)

Preceding gene: 117919128

Following gene: 117919126

Centisome position: 16.0

GC content: 45.45

Gene sequence:

>561_bases
ATGAGTCGTGTGACCCTCGCCATTATCGCCTTTTTTGGTACTGCGCTGGTGCTATATTGGCAAGTGCAGCAAAAACGTGG
TGGCGATACGGATGACAGCTTGAACGTCAGCGACAGACCCGATTACATTATCGAAGATCTGCGCAGCATTGAGTTTAATG
AGCAAGGGCAAGTTAACAGTCGCGTCACGGCAAAGCACATGGAACACTATGAGCTGAAAAACCAAACCGACTTTACTGAG
CCCGTCTATCTTGTCTATCCCGACCAAGGTAAAGCAAAATGGCAGATCCGAGCCGATCAAGGTCGACTCAATAAAGATAC
CGGCAAGGTTGTATTAGAAAATAATGTTATTATCGATGCCATCAGCCCTGGTGAACCCATACAGACATTGTCCACCAGTT
TTTTAGAACTCGATCTCAACACTATGATAATGACCTCTGACCGCATCATTTACGTCACAGGGAAAGATTTTAATATTCAA
GGGCAAGGCCTTTATGCCGACCTTAACGCGCAGGAAGTGCAATTGACCAGTCAGGTAGTAGGAACCTATGAAGCAAAATA
A

Upstream 100 bases:

>100_bases
TTGTGACTCACTTAAATGGTGGACATGGCGCACTCAGGGAACTCACGGATCTGCTCTTATTGAGCCAAAATAAGTTCACC
TCCGCCCATGGGATGAGCAT

Downstream 100 bases:

>100_bases
CATATTACTTGCCGGCCTAATGCTAATCACCAGCATGAGCGCCTTCGCCAAGGTCGGTGACTTACAGCAAGAAGTGAAAA
TTAAAGCCGTTAGCCAAACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MSRVTLAIIAFFGTALVLYWQVQQKRGGDTDDSLNVSDRPDYIIEDLRSIEFNEQGQVNSRVTAKHMEHYELKNQTDFTE
PVYLVYPDQGKAKWQIRADQGRLNKDTGKVVLENNVIIDAISPGEPIQTLSTSFLELDLNTMIMTSDRIIYVTGKDFNIQ
GQGLYADLNAQEVQLTSQVVGTYEAK

Sequences:

>Translated_186_residues
MSRVTLAIIAFFGTALVLYWQVQQKRGGDTDDSLNVSDRPDYIIEDLRSIEFNEQGQVNSRVTAKHMEHYELKNQTDFTE
PVYLVYPDQGKAKWQIRADQGRLNKDTGKVVLENNVIIDAISPGEPIQTLSTSFLELDLNTMIMTSDRIIYVTGKDFNIQ
GQGLYADLNAQEVQLTSQVVGTYEAK
>Mature_185_residues
SRVTLAIIAFFGTALVLYWQVQQKRGGDTDDSLNVSDRPDYIIEDLRSIEFNEQGQVNSRVTAKHMEHYELKNQTDFTEP
VYLVYPDQGKAKWQIRADQGRLNKDTGKVVLENNVIIDAISPGEPIQTLSTSFLELDLNTMIMTSDRIIYVTGKDFNIQG
QGLYADLNAQEVQLTSQVVGTYEAK

Specific function: Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG3117

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptC family [H]

Homologues:

Organism=Escherichia coli, GI1789591, Length=184, Percent_Identity=23.3695652173913, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010664 [H]

Pfam domain/function: PF06835 DUF1239 [H]

EC number: NA

Molecular weight: Translated: 21040; Mature: 20909

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRVTLAIIAFFGTALVLYWQVQQKRGGDTDDSLNVSDRPDYIIEDLRSIEFNEQGQVNS
CCCHHHHHHHHHHHHHEEEEEEHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
RVTAKHMEHYELKNQTDFTEPVYLVYPDQGKAKWQIRADQGRLNKDTGKVVLENNVIIDA
HHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCEEEECCEEEEE
ISPGEPIQTLSTSFLELDLNTMIMTSDRIIYVTGKDFNIQGQGLYADLNAQEVQLTSQVV
ECCCCCHHHHHHEEEEEECCEEEEECCEEEEEECCCCEEECCCEEEECCCHHEEEHHHHH
GTYEAK
EEECCC
>Mature Secondary Structure 
SRVTLAIIAFFGTALVLYWQVQQKRGGDTDDSLNVSDRPDYIIEDLRSIEFNEQGQVNS
CCHHHHHHHHHHHHHEEEEEEHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
RVTAKHMEHYELKNQTDFTEPVYLVYPDQGKAKWQIRADQGRLNKDTGKVVLENNVIIDA
HHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCEEEECCEEEEE
ISPGEPIQTLSTSFLELDLNTMIMTSDRIIYVTGKDFNIQGQGLYADLNAQEVQLTSQVV
ECCCCCHHHHHHEEEEEECCEEEEECCEEEEEECCCCEEECCCEEEECCCHHEEEHHHHH
GTYEAK
EEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]