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The map label for this gene is psd [H]

Identifier: 117919041

GI number: 117919041

Start: 689898

End: 690776

Strand: Reverse

Name: psd [H]

Synonym: Shewana3_0588

Alternate gene names: 117919041

Gene position: 690776-689898 (Counterclockwise)

Preceding gene: 117919042

Following gene: 117919040

Centisome position: 13.89

GC content: 50.4

Gene sequence:

>879_bases
TTGGATAAAGTTAAAATTGCGCTGCAGTACATGCTGCCAAAGCACCTGTTATCTCGCTTAGTCGGTAAACTTGCCGCTTC
CGAAGCTGGCGCATTAACGACTGCCGCGATTAAATGGTTTATCAAACAATATAAAATCGATATGAGCGAAGCGGCTCAGA
GCGAACCCGAAGCCTATAAAAGCTTCAACGACTTTTTTACCCGCGCACTTAAGCCCGGTATTCGCCCAATTAATACTGCG
ACCAACATCATGGTGCACCCGGTTGATGGTGCCGTTAGCCAACTCGGCCCCATCAAGGATGGTCGTATTTTCCAAGCTAA
AGGCCATCACTATTCTTCACTCACCCTACTGGGCGACCAAGCCGAAGATGCTAAACGCTTCGAAGGTGGGGATTTTGCGA
CCATTTATCTCGCTCCCAAGGATTATCACCGCATCCATATGCCGATAAAGGGCACACTGTCAAAGATGACCTATGTACCG
GGCGAACTGTTTTCCGTTAACCCCTTAACGGCTCGCCATGTACCAGGCCTGTTTGCTCGCAACGAACGTGTCGTGGCGAT
TTTTGAAACCGAACTTGGCCCGCTAGCCATGGTATTAGTGGGTGCGACCATTGTGGCTAGCATCGAAACCGTTTGGGCAG
GCACTATTACGCCGCCAACGGGCAAGCAAGTCTTCACGTGGGAATACCCAACGGTAGGACCAGACGCCATTACTTTAGAT
AAAGGCGAAGAAATGGGCCGCTTCAAGCTTGGCAGTACCGTCGTCATGCTGTTTGCTAAAGATGCTATCGACACCTTCGC
CGAAGGCGTTGAACCCGAAGCCGTAACGCGTATGGGTCAAGCCTTTGCAAATCTGAAAAATCAGGCGTCAGCCGACTAA

Upstream 100 bases:

>100_bases
GTGCCCAAAGCGATGAATAACGAACGCCATCGTTTTGCATAAAATTAACGTAAAACAAGTCTCAACCTAAGTTGAGCAAC
ATAAAGGAAAGGAACATAAA

Downstream 100 bases:

>100_bases
TTACGGCGACCCAATTGAGCCAGACTGCTAAACCTTCGGGATTAATCGAATTACACTTAGCTGTGCTGATGTTTGGCGGC
ACAGCTTTGTTTTCAAAGTT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MDKVKIALQYMLPKHLLSRLVGKLAASEAGALTTAAIKWFIKQYKIDMSEAAQSEPEAYKSFNDFFTRALKPGIRPINTA
TNIMVHPVDGAVSQLGPIKDGRIFQAKGHHYSSLTLLGDQAEDAKRFEGGDFATIYLAPKDYHRIHMPIKGTLSKMTYVP
GELFSVNPLTARHVPGLFARNERVVAIFETELGPLAMVLVGATIVASIETVWAGTITPPTGKQVFTWEYPTVGPDAITLD
KGEEMGRFKLGSTVVMLFAKDAIDTFAEGVEPEAVTRMGQAFANLKNQASAD

Sequences:

>Translated_292_residues
MDKVKIALQYMLPKHLLSRLVGKLAASEAGALTTAAIKWFIKQYKIDMSEAAQSEPEAYKSFNDFFTRALKPGIRPINTA
TNIMVHPVDGAVSQLGPIKDGRIFQAKGHHYSSLTLLGDQAEDAKRFEGGDFATIYLAPKDYHRIHMPIKGTLSKMTYVP
GELFSVNPLTARHVPGLFARNERVVAIFETELGPLAMVLVGATIVASIETVWAGTITPPTGKQVFTWEYPTVGPDAITLD
KGEEMGRFKLGSTVVMLFAKDAIDTFAEGVEPEAVTRMGQAFANLKNQASAD
>Mature_292_residues
MDKVKIALQYMLPKHLLSRLVGKLAASEAGALTTAAIKWFIKQYKIDMSEAAQSEPEAYKSFNDFFTRALKPGIRPINTA
TNIMVHPVDGAVSQLGPIKDGRIFQAKGHHYSSLTLLGDQAEDAKRFEGGDFATIYLAPKDYHRIHMPIKGTLSKMTYVP
GELFSVNPLTARHVPGLFARNERVVAIFETELGPLAMVLVGATIVASIETVWAGTITPPTGKQVFTWEYPTVGPDAITLD
KGEEMGRFKLGSTVVMLFAKDAIDTFAEGVEPEAVTRMGQAFANLKNQASAD

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=306, Percent_Identity=32.0261437908497, Blast_Score=135, Evalue=6e-32,
Organism=Escherichia coli, GI1790604, Length=284, Percent_Identity=52.4647887323944, Blast_Score=305, Evalue=2e-84,
Organism=Caenorhabditis elegans, GI71980843, Length=272, Percent_Identity=33.4558823529412, Blast_Score=127, Evalue=5e-30,
Organism=Caenorhabditis elegans, GI71980840, Length=288, Percent_Identity=32.6388888888889, Blast_Score=127, Evalue=7e-30,
Organism=Saccharomyces cerevisiae, GI6321609, Length=281, Percent_Identity=28.1138790035587, Blast_Score=105, Evalue=9e-24,
Organism=Saccharomyces cerevisiae, GI6324160, Length=159, Percent_Identity=38.3647798742138, Blast_Score=90, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24649526, Length=314, Percent_Identity=31.8471337579618, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24649528, Length=314, Percent_Identity=31.8471337579618, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24649524, Length=314, Percent_Identity=31.8471337579618, Blast_Score=127, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 31873; Mature: 31873

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKVKIALQYMLPKHLLSRLVGKLAASEAGALTTAAIKWFIKQYKIDMSEAAQSEPEAYK
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHH
SFNDFFTRALKPGIRPINTATNIMVHPVDGAVSQLGPIKDGRIFQAKGHHYSSLTLLGDQ
HHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCEEEEECCCCEEEEEEECCC
AEDAKRFEGGDFATIYLAPKDYHRIHMPIKGTLSKMTYVPGELFSVNPLTARHVPGLFAR
CHHHHHCCCCCEEEEEECCCCCEEEECCHHHHHHHHEECCCCEEECCCCCHHHCCCCEEC
NERVVAIFETELGPLAMVLVGATIVASIETVWAGTITPPTGKQVFTWEYPTVGPDAITLD
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEEC
KGEEMGRFKLGSTVVMLFAKDAIDTFAEGVEPEAVTRMGQAFANLKNQASAD
CCCCCCCEECCCEEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDKVKIALQYMLPKHLLSRLVGKLAASEAGALTTAAIKWFIKQYKIDMSEAAQSEPEAYK
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHH
SFNDFFTRALKPGIRPINTATNIMVHPVDGAVSQLGPIKDGRIFQAKGHHYSSLTLLGDQ
HHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCEEEEECCCCEEEEEEECCC
AEDAKRFEGGDFATIYLAPKDYHRIHMPIKGTLSKMTYVPGELFSVNPLTARHVPGLFAR
CHHHHHCCCCCEEEEEECCCCCEEEECCHHHHHHHHEECCCCEEECCCCCHHHCCCCEEC
NERVVAIFETELGPLAMVLVGATIVASIETVWAGTITPPTGKQVFTWEYPTVGPDAITLD
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEEC
KGEEMGRFKLGSTVVMLFAKDAIDTFAEGVEPEAVTRMGQAFANLKNQASAD
CCCCCCCEECCCEEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA