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The map label for this gene is ycaD [C]

Identifier: 117918905

GI number: 117918905

Start: 523260

End: 524432

Strand: Reverse

Name: ycaD [C]

Synonym: Shewana3_0448

Alternate gene names: 117918905

Gene position: 524432-523260 (Counterclockwise)

Preceding gene: 117918906

Following gene: 117918901

Centisome position: 10.55

GC content: 52.0

Gene sequence:

>1173_bases
GTGGAAAATATCGCGTTAACGCCATCGACTCAAAAGCCTGGGCTGTTTGTGCCTGTAGCAGGCTTAAGCCTATTTGCCCT
CGCCTCGGGCTATTTGATGAGTTTGATCCCACTCTCCCTCAGTTATTTTGAGCTCAGTCTCGATCTCGCACCATGGCTGG
CGAGTATTTTCTACCTAGGCTTATTACTGGGCGCACCTTGTATCGCCCCCATAGTGGCGCGCATCGGCCACAGTAAAGCC
TTTATTCTGTTTTTGAATGTCTTATTGTGCAGCGTTGTGGTGATGGTTTTGCTACCACAGAGCAGCGTTTGGTTAGCCGC
CCGTTTGATCGCAGGCCTCGCCGTGGCGGGGATTTTTGTGGTTGTCGAGTCTTGGTTGCTAATGGCCGATACCCAAAAAC
AGCGGGCCAAACGCTTAGGACTTTATATGACCGCCCTCTACGGTGGTACGGCAATTGGACAACTCGCGGTCGATTATTTA
GGTACCACGGGCAACCTCCCCTATTTAGTGGTGATAGGTTTACTGGCCGCCGCCAGTTTGCCCGCGTTATTAGTTAAGCG
TGGTCAGCCGCAATCGAGCGAGCAACACTCGATTGCTCTGTCAGATCTTAAAAACCTGAGTAAACCCGCCGTGGTCGGTT
GTTTAGTCTCGGGATTATTACTCGGCCCCATCTACGGCCTATTGCCTGTGTATGTGTCGCAGGACATGGGATTTGCCCAG
CAGACGGGGCAATTTATGGCGTTAATCATTATGGGCGGCATGATAGTTCAGCCCTTAGTGAGCTATTTATCTCCACGCTT
CCAGAAGAGTGCCTTAATGGCCGCCTTCTGCTTAATTGGCGCTGCGGCACTCTTCTTACTGACGCAAAAATCCCTTGTTG
GACTCTGGCTAGGCTTTGTGTTGCTGGGCGCCTGCGCCTTTGCCCTCTACCCTATCGCCATCAGTCTGGCCTGCGATCAT
CTGCCCAGCAGTCAAATTGTGTCTGCAACCCAGATTATGTTGCTCAGTTATTCCGTCGGTTCGGTTATCGGCCCGGTTGC
CGCCAGTCGCTTTAATCATATCGAACATGGCTTGCTACTCTACTTAGCCGCAAGCTTTGTGCTGACCTTTGGTTATCTTG
GCGCGCACTTACTGCTACGGAGCAAACCCCGCTTACCGACGGCAAAAGCTTAG

Upstream 100 bases:

>100_bases
CTCAGTCAATCTAACTCACTTTACCCTGCACCACATTCGGCCTAAAGTCGCGCCCGTAATCTCGCCTTCTGTTTATTTTT
TACCTGTTTTGGTACCGCCA

Downstream 100 bases:

>100_bases
TGCTGGTTGGCCGAGTGAATAAAAATGGGCGCCGATAAGGGCGCCCATTTTGTTAGGAAGTTTGTTGCCTTAACTCAGCT
ACAGGCTCAACGCTGGGAAT

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MENIALTPSTQKPGLFVPVAGLSLFALASGYLMSLIPLSLSYFELSLDLAPWLASIFYLGLLLGAPCIAPIVARIGHSKA
FILFLNVLLCSVVVMVLLPQSSVWLAARLIAGLAVAGIFVVVESWLLMADTQKQRAKRLGLYMTALYGGTAIGQLAVDYL
GTTGNLPYLVVIGLLAAASLPALLVKRGQPQSSEQHSIALSDLKNLSKPAVVGCLVSGLLLGPIYGLLPVYVSQDMGFAQ
QTGQFMALIIMGGMIVQPLVSYLSPRFQKSALMAAFCLIGAAALFLLTQKSLVGLWLGFVLLGACAFALYPIAISLACDH
LPSSQIVSATQIMLLSYSVGSVIGPVAASRFNHIEHGLLLYLAASFVLTFGYLGAHLLLRSKPRLPTAKA

Sequences:

>Translated_390_residues
MENIALTPSTQKPGLFVPVAGLSLFALASGYLMSLIPLSLSYFELSLDLAPWLASIFYLGLLLGAPCIAPIVARIGHSKA
FILFLNVLLCSVVVMVLLPQSSVWLAARLIAGLAVAGIFVVVESWLLMADTQKQRAKRLGLYMTALYGGTAIGQLAVDYL
GTTGNLPYLVVIGLLAAASLPALLVKRGQPQSSEQHSIALSDLKNLSKPAVVGCLVSGLLLGPIYGLLPVYVSQDMGFAQ
QTGQFMALIIMGGMIVQPLVSYLSPRFQKSALMAAFCLIGAAALFLLTQKSLVGLWLGFVLLGACAFALYPIAISLACDH
LPSSQIVSATQIMLLSYSVGSVIGPVAASRFNHIEHGLLLYLAASFVLTFGYLGAHLLLRSKPRLPTAKA
>Mature_390_residues
MENIALTPSTQKPGLFVPVAGLSLFALASGYLMSLIPLSLSYFELSLDLAPWLASIFYLGLLLGAPCIAPIVARIGHSKA
FILFLNVLLCSVVVMVLLPQSSVWLAARLIAGLAVAGIFVVVESWLLMADTQKQRAKRLGLYMTALYGGTAIGQLAVDYL
GTTGNLPYLVVIGLLAAASLPALLVKRGQPQSSEQHSIALSDLKNLSKPAVVGCLVSGLLLGPIYGLLPVYVSQDMGFAQ
QTGQFMALIIMGGMIVQPLVSYLSPRFQKSALMAAFCLIGAAALFLLTQKSLVGLWLGFVLLGACAFALYPIAISLACDH
LPSSQIVSATQIMLLSYSVGSVIGPVAASRFNHIEHGLLLYLAASFVLTFGYLGAHLLLRSKPRLPTAKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=362, Percent_Identity=30.6629834254144, Blast_Score=142, Evalue=4e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41248; Mature: 41248

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA