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The map label for this gene is yacF [C]

Identifier: 117918872

GI number: 117918872

Start: 473002

End: 473736

Strand: Reverse

Name: yacF [C]

Synonym: Shewana3_0415

Alternate gene names: 117918872

Gene position: 473736-473002 (Counterclockwise)

Preceding gene: 117918873

Following gene: 117918871

Centisome position: 9.53

GC content: 48.71

Gene sequence:

>735_bases
ATGACTGACTTAGTTTATGAACAGCCTTTAAATGAGAAAATCCGTAGCTACTTGCGGCTCGAATATCTCAATAAACAGCT
CAGTAATAACCTAAATCACGACCACCAACATAGATGTTTCTACCCTCTTTTCTCCCTGTGCGAATTATCGGAGCGTTGCG
ACTATCGCAATGAGGTCCTTAAAGATATCGAACGCAATCTGCTACAACTAAGCAAATGGCAAGAGCTCGACCATGCCGAT
AGCGAACAGATTGAGTTTTACATTCAAGCATTAATGCAAGCCAGAGAGCCACTTCAGCGTCCCGAGCGCTGTGGTAGTCA
ACTCAAACAAGACCGTTTTTTATCGGCTCTGCGACAGCGTTTTGGTATGCCAGGCGCCTGCTGCAACTTCGATCTTCCCC
AACTGCATTTTTGGCTCGCCAAACCTTGGGAAGAAAGACAGCAAGATTACCAAGCTTGGATCAGCCATTTTGATCCTTTA
CTCAATCCCATCACGCTTTTGCTTCAGTTAACTCGCAGTACCGCCCATTTCGATAATGCCACCGCCCATGCCGGTTTTTA
CCAAGGTGACAGCGCTCAAGCACTCTCGCTAGTGCGAGTCAAAGTCGATGCCGCCCACGGCTGCTACCCCACCATCAGTG
GCCATCGCAATCGCTACGCCATCCACTTTGTGCAATTCGACCAACAGCGCCACTCTGACCGCAGCATCGAATTCCTACTA
GCGACCTGTGCTTGA

Upstream 100 bases:

>100_bases
GACGACATTATTGATAATCAGGGAGAGATATCAACACTAAAACAAGAGGTGCAAGCATTGCACCAGCGCTATTTACAATT
ATCCGGTAATCACGACGCCC

Downstream 100 bases:

>100_bases
AGCCTTTACACTAACGACCTCTAAGCTGCTGCCGAGTTAAAGCCGCATAATTGCGATACTCAGCGATTCCCTTGTTATTT
CAGTCGACTGCTAAGGAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MTDLVYEQPLNEKIRSYLRLEYLNKQLSNNLNHDHQHRCFYPLFSLCELSERCDYRNEVLKDIERNLLQLSKWQELDHAD
SEQIEFYIQALMQAREPLQRPERCGSQLKQDRFLSALRQRFGMPGACCNFDLPQLHFWLAKPWEERQQDYQAWISHFDPL
LNPITLLLQLTRSTAHFDNATAHAGFYQGDSAQALSLVRVKVDAAHGCYPTISGHRNRYAIHFVQFDQQRHSDRSIEFLL
ATCA

Sequences:

>Translated_244_residues
MTDLVYEQPLNEKIRSYLRLEYLNKQLSNNLNHDHQHRCFYPLFSLCELSERCDYRNEVLKDIERNLLQLSKWQELDHAD
SEQIEFYIQALMQAREPLQRPERCGSQLKQDRFLSALRQRFGMPGACCNFDLPQLHFWLAKPWEERQQDYQAWISHFDPL
LNPITLLLQLTRSTAHFDNATAHAGFYQGDSAQALSLVRVKVDAAHGCYPTISGHRNRYAIHFVQFDQQRHSDRSIEFLL
ATCA
>Mature_243_residues
TDLVYEQPLNEKIRSYLRLEYLNKQLSNNLNHDHQHRCFYPLFSLCELSERCDYRNEVLKDIERNLLQLSKWQELDHADS
EQIEFYIQALMQAREPLQRPERCGSQLKQDRFLSALRQRFGMPGACCNFDLPQLHFWLAKPWEERQQDYQAWISHFDPLL
NPITLLLQLTRSTAHFDNATAHAGFYQGDSAQALSLVRVKVDAAHGCYPTISGHRNRYAIHFVQFDQQRHSDRSIEFLLA
TCA

Specific function: Unknown

COG id: COG4582

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0289 family [H]

Homologues:

Organism=Escherichia coli, GI1786291, Length=246, Percent_Identity=36.9918699186992, Blast_Score=172, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009777 [H]

Pfam domain/function: PF07072 DUF1342 [H]

EC number: NA

Molecular weight: Translated: 28786; Mature: 28655

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCC
>Mature Secondary Structure 
TDLVYEQPLNEKIRSYLRLEYLNKQLSNNLNHDHQHRCFYPLFSLCELSERCDYRNEVL
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
KDIERNLLQLSKWQELDHADSEQIEFYIQALMQAREPLQRPERCGSQLKQDRFLSALRQR
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGMPGACCNFDLPQLHFWLAKPWEERQQDYQAWISHFDPLLNPITLLLQLTRSTAHFDNA
CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TAHAGFYQGDSAQALSLVRVKVDAAHGCYPTISGHRNRYAIHFVQFDQQRHSDRSIEFLL
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEHHHHHCCCCHHHHHH
ATCA
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA