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The map label for this gene is ytfE [C]

Identifier: 117918854

GI number: 117918854

Start: 456503

End: 457249

Strand: Reverse

Name: ytfE [C]

Synonym: Shewana3_0397

Alternate gene names: 117918854

Gene position: 457249-456503 (Counterclockwise)

Preceding gene: 117918855

Following gene: 117918853

Centisome position: 9.2

GC content: 51.94

Gene sequence:

>747_bases
ATGTTATCTGCCCATCTCTCATCCGAAAACCCAGTTGAAGCACAGTCAGCCTCAATCACCCCATGGCTTGAACGCAAAGT
GGGGGAATTGGTCGCAGAGGATTTTCGCCGCGCCCACGTGTTTAGCCAATTTGGTATCGATTTCTGCTGCGGGGGTGGTC
GAGCACTCGTTAATGCCTGCGAGCGAGCAGAGGCCAATCCTGAGCAAGTCGTCGCCGCACTGGAGGCCGTTTCCCACTCG
GGAGCCAAAGAAGATGAACTCAATCAATTGCCACTCGACCAGTTGATCGATTACATCGAGCGCACCCATCATCAATATGT
TCGCGCTAAGGCGCCGTTATTGCTCGAATATTCAGAGAAAATGGTACGCGCCCATGGTGAGCATTATGCGGAGATCATTC
CCTTCGCTGGCTGGGTGCGCGCCTTAATTGAAGACTTAATGCCGCATTTGATGAAGGAAGAAAATATCCTCTTCCCCGCG
ATCCGCGCCATGAGCCGAGGTGAGCAAGTGCAAGGTTGTTTTGGGCACATAGGCAACCCCATCAATGCGATGCAATACGA
GCACGAAGAAGCTGGGCAAATTTTGCAAAAGCTACACGAGTTAACCAATGATTTTACGCCGCCGGAATACGCCTGCACCA
CATGGCGCGTTTGTTACGCGACTCTGGTCGAATTTGAGGCAGACTTGCACCGACACATCCATTTAGAGAACAACATTCTC
TTCCCTAAGGCGCTACAACTCGCCTAG

Upstream 100 bases:

>100_bases
AAAATGTGATATGCCCGACTAATTTAGTCAGGATTTATTGCGCGAATATAAAGCTGCAAATATTATGCATGTAAAATTAT
TCTCGCTTTGGAGTGTTGCT

Downstream 100 bases:

>100_bases
TACAGACTGCTGATTCACAACAAAGGCCAGCACAACTGCTGGCCTTTGTTATTTTGGCGTGTTACAAAAAGTGGTGTGCT
ACGCAAGGAGCCGCCGCCAT

Product: hemerythrin HHE cation binding domain-containing protein

Products: NA

Alternate protein names: RCMNS [H]

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MLSAHLSSENPVEAQSASITPWLERKVGELVAEDFRRAHVFSQFGIDFCCGGGRALVNACERAEANPEQVVAALEAVSHS
GAKEDELNQLPLDQLIDYIERTHHQYVRAKAPLLLEYSEKMVRAHGEHYAEIIPFAGWVRALIEDLMPHLMKEENILFPA
IRAMSRGEQVQGCFGHIGNPINAMQYEHEEAGQILQKLHELTNDFTPPEYACTTWRVCYATLVEFEADLHRHIHLENNIL
FPKALQLA

Sequences:

>Translated_248_residues
MLSAHLSSENPVEAQSASITPWLERKVGELVAEDFRRAHVFSQFGIDFCCGGGRALVNACERAEANPEQVVAALEAVSHS
GAKEDELNQLPLDQLIDYIERTHHQYVRAKAPLLLEYSEKMVRAHGEHYAEIIPFAGWVRALIEDLMPHLMKEENILFPA
IRAMSRGEQVQGCFGHIGNPINAMQYEHEEAGQILQKLHELTNDFTPPEYACTTWRVCYATLVEFEADLHRHIHLENNIL
FPKALQLA
>Mature_248_residues
MLSAHLSSENPVEAQSASITPWLERKVGELVAEDFRRAHVFSQFGIDFCCGGGRALVNACERAEANPEQVVAALEAVSHS
GAKEDELNQLPLDQLIDYIERTHHQYVRAKAPLLLEYSEKMVRAHGEHYAEIIPFAGWVRALIEDLMPHLMKEENILFPA
IRAMSRGEQVQGCFGHIGNPINAMQYEHEEAGQILQKLHELTNDFTPPEYACTTWRVCYATLVEFEADLHRHIHLENNIL
FPKALQLA

Specific function: Involved in anaerobic NO protection [H]

COG id: COG2846

COG function: function code D; Regulator of cell morphogenesis and NO signaling

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790654, Length=224, Percent_Identity=35.2678571428571, Blast_Score=142, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007500
- InterPro:   IPR019903
- InterPro:   IPR012312 [H]

Pfam domain/function: PF01814 Hemerythrin; PF04405 ScdA_N [H]

EC number: NA

Molecular weight: Translated: 28049; Mature: 28049

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSAHLSSENPVEAQSASITPWLERKVGELVAEDFRRAHVFSQFGIDFCCGGGRALVNAC
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHH
ERAEANPEQVVAALEAVSHSGAKEDELNQLPLDQLIDYIERTHHQYVRAKAPLLLEYSEK
HHCCCCHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
MVRAHGEHYAEIIPFAGWVRALIEDLMPHLMKEENILFPAIRAMSRGEQVQGCFGHIGNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHCCCC
INAMQYEHEEAGQILQKLHELTNDFTPPEYACTTWRVCYATLVEFEADLHRHIHLENNIL
HHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCC
FPKALQLA
CCHHHHCC
>Mature Secondary Structure
MLSAHLSSENPVEAQSASITPWLERKVGELVAEDFRRAHVFSQFGIDFCCGGGRALVNAC
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHH
ERAEANPEQVVAALEAVSHSGAKEDELNQLPLDQLIDYIERTHHQYVRAKAPLLLEYSEK
HHCCCCHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
MVRAHGEHYAEIIPFAGWVRALIEDLMPHLMKEENILFPAIRAMSRGEQVQGCFGHIGNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHCCCC
INAMQYEHEEAGQILQKLHELTNDFTPPEYACTTWRVCYATLVEFEADLHRHIHLENNIL
HHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCC
FPKALQLA
CCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA