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The map label for this gene is cph2 [H]

Identifier: 117918833

GI number: 117918833

Start: 417068

End: 418987

Strand: Reverse

Name: cph2 [H]

Synonym: Shewana3_0376

Alternate gene names: 117918833

Gene position: 418987-417068 (Counterclockwise)

Preceding gene: 117918834

Following gene: 117918832

Centisome position: 8.43

GC content: 46.61

Gene sequence:

>1920_bases
ATGACACTGTTTAGACAGATATATTCGCTGCTTTTTAGCCTGTTCTTGCTGGTTGTTGCAAGCCTTGGCTATGTGCAATT
TACTGAGACACAAAGCTTTTTGACCAAGCAAATGGAATCGGATCTAAACAATACCAGTACCTCGCTTGGACTCATGCTTA
CTCCAGCACTGCAAGCAGGCGATACCGCCGCAGCCGAAACCTTAGTTAATGTGATATTTGAGGGCGGCTATTACAAAAAC
ATTAAGCTGACCTGGATGGTTGATGGCAAACAACAAGAATGGAACAACCCACTCAAAATTGAAGACGTGCCTCAATGGTT
CATCAATCTCAATCTATTTAAAACCATCAAAAAAGAAAGCACTATCACCTCAGGATGGTTACAGCTCGCTCAGCTAGAAA
TTACCGCGCACCCAGGTTTTGGTTACCATGAATTGTGGCGAATTATGTCTAATACCATTATCGCCTTCTCATTACTCTTT
TTAGTCGCCATTTTTACCGCGAGATTAGGCTTAACCTGGATCTTAAAACCACTGCATGCCTTATCTGATCATGCCAAAAA
GATTGCCGCCCGCCAGTTTGGCCCCGATATGCCGCTGCCTAAAACCACTGAACTCAAGGACTTGGTTACCGCATTCAACA
GCATGTCAGCCCAGCTCAAGCAATTGTTCCAATCACTCGATGAAGAAGTCGGCTCTTTACGCAAAAAGAACCTCACCGAT
CCCGCCTCTGGGCTGCCTAATCGCCAATATGTGGTCAGTCGCCTCAATGGTTGGCTAAGCGAACCGAGCAGTGGTGCCCT
ATTCTTAGCTAAGCTCGACTGGCTCGAAGAAGTACACAGCAAATATGGCTATCAAGTTCGGGATGAAACCATTCGCCTAT
TAGCCGAAAAACTGGTTCAGCAACTCAATGAGATCACCCCATCCGTGATAGCGCGTATTGCCGCGTTTGAATTTGCTTTC
CTCGTTACCGATGTCGAACACGACCAAATCAGTAAGTACCTGCAAACCCTGATCCGCACCATCAACCAAGAAATATCTAA
AGCAGGCTGTAAGCCCAATGAGAACTTTGCCATCGGTGTCGCTGAACGCATTGGTCAGATGAAGGTGTCAGACATTCTGG
CGCAGGCGGATAACGCGCTGCAAAAAGCCCTGAAGGAACATAAATCCTTCCATTGGTTCGAAACAACAGAGCAACAGCTG
TTTACCCGTGAACAGTGGCGCGACAACTTAAGCCATGCCATCAGCAATAAGAAGTTTAAGTTCCGTTGGCAGCCTATCCA
GTTTTGTAATGGTGATGGTGTCGCCCAGCGAGAGCTTTACTGTCAACTTGAGTTGGGTGATAAGGTGGCCCACGCTGGCC
AGTTTATGCCCTATATTGAACTGCTATCACTCGGCTCTCTGCTCGATAAGTGCCTGATTGAGACTGTGTATGAGCAAAAA
CTACTTGAGCGTAACTATGAGCCACTGGCAATCAACCTGACGCATCAGAGTATTAGTGATACCCTGTTCCATGACTGGCT
CAATCACTTCCTGCGCAGCATGCCACAGGTCGAGCGTATCTGTTTTGAAATCCCCGAGGCAGGTGTCTACAGCGATTTAG
AGTCCTGTGTGCTGTTATGCAATATTATTCGTGATAATGGCGCTAAATTTGGTATCGACCACTTTGGTCGCCAATTTGGC
TCAATGTCGTACCTTCAAGAGCTCAGACCAAGTTACGTCAAGCTCGACCAATCCTTCTCCTACTATGACGAGGCCTCACA
TAATAGCGAGCTCTGCCGCGCCATTATCAATGTCGCCAAAGGATTGGATATTCAGGTGATAGTGACAGGTATCCAAGAAA
AAGCGCAGTTAGAACGCTTTGATGAGCTTAAAACTGACGCCTATCAAGGCTTTATCGTTCCGCCAGAGAATATCGACTAA

Upstream 100 bases:

>100_bases
CAGGCTCGTCGACACGACTCGAAAAATGGAATGACCTTAACCATAGGTTAGGGGTTGACCGACTCAGGCAGCCCAAATTA
AAACTGGAGTAGCACCAAAG

Downstream 100 bases:

>100_bases
GTCGAATATCTTTGTATTAAGGCTCCTACGGGAGCCTTAATTATTTGAGCGGGGAGAATCGCTTGGGGCATCACAAACTA
TGAAGTGCAATAACGACTGC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 639; Mature: 638

Protein sequence:

>639_residues
MTLFRQIYSLLFSLFLLVVASLGYVQFTETQSFLTKQMESDLNNTSTSLGLMLTPALQAGDTAAAETLVNVIFEGGYYKN
IKLTWMVDGKQQEWNNPLKIEDVPQWFINLNLFKTIKKESTITSGWLQLAQLEITAHPGFGYHELWRIMSNTIIAFSLLF
LVAIFTARLGLTWILKPLHALSDHAKKIAARQFGPDMPLPKTTELKDLVTAFNSMSAQLKQLFQSLDEEVGSLRKKNLTD
PASGLPNRQYVVSRLNGWLSEPSSGALFLAKLDWLEEVHSKYGYQVRDETIRLLAEKLVQQLNEITPSVIARIAAFEFAF
LVTDVEHDQISKYLQTLIRTINQEISKAGCKPNENFAIGVAERIGQMKVSDILAQADNALQKALKEHKSFHWFETTEQQL
FTREQWRDNLSHAISNKKFKFRWQPIQFCNGDGVAQRELYCQLELGDKVAHAGQFMPYIELLSLGSLLDKCLIETVYEQK
LLERNYEPLAINLTHQSISDTLFHDWLNHFLRSMPQVERICFEIPEAGVYSDLESCVLLCNIIRDNGAKFGIDHFGRQFG
SMSYLQELRPSYVKLDQSFSYYDEASHNSELCRAIINVAKGLDIQVIVTGIQEKAQLERFDELKTDAYQGFIVPPENID

Sequences:

>Translated_639_residues
MTLFRQIYSLLFSLFLLVVASLGYVQFTETQSFLTKQMESDLNNTSTSLGLMLTPALQAGDTAAAETLVNVIFEGGYYKN
IKLTWMVDGKQQEWNNPLKIEDVPQWFINLNLFKTIKKESTITSGWLQLAQLEITAHPGFGYHELWRIMSNTIIAFSLLF
LVAIFTARLGLTWILKPLHALSDHAKKIAARQFGPDMPLPKTTELKDLVTAFNSMSAQLKQLFQSLDEEVGSLRKKNLTD
PASGLPNRQYVVSRLNGWLSEPSSGALFLAKLDWLEEVHSKYGYQVRDETIRLLAEKLVQQLNEITPSVIARIAAFEFAF
LVTDVEHDQISKYLQTLIRTINQEISKAGCKPNENFAIGVAERIGQMKVSDILAQADNALQKALKEHKSFHWFETTEQQL
FTREQWRDNLSHAISNKKFKFRWQPIQFCNGDGVAQRELYCQLELGDKVAHAGQFMPYIELLSLGSLLDKCLIETVYEQK
LLERNYEPLAINLTHQSISDTLFHDWLNHFLRSMPQVERICFEIPEAGVYSDLESCVLLCNIIRDNGAKFGIDHFGRQFG
SMSYLQELRPSYVKLDQSFSYYDEASHNSELCRAIINVAKGLDIQVIVTGIQEKAQLERFDELKTDAYQGFIVPPENID
>Mature_638_residues
TLFRQIYSLLFSLFLLVVASLGYVQFTETQSFLTKQMESDLNNTSTSLGLMLTPALQAGDTAAAETLVNVIFEGGYYKNI
KLTWMVDGKQQEWNNPLKIEDVPQWFINLNLFKTIKKESTITSGWLQLAQLEITAHPGFGYHELWRIMSNTIIAFSLLFL
VAIFTARLGLTWILKPLHALSDHAKKIAARQFGPDMPLPKTTELKDLVTAFNSMSAQLKQLFQSLDEEVGSLRKKNLTDP
ASGLPNRQYVVSRLNGWLSEPSSGALFLAKLDWLEEVHSKYGYQVRDETIRLLAEKLVQQLNEITPSVIARIAAFEFAFL
VTDVEHDQISKYLQTLIRTINQEISKAGCKPNENFAIGVAERIGQMKVSDILAQADNALQKALKEHKSFHWFETTEQQLF
TREQWRDNLSHAISNKKFKFRWQPIQFCNGDGVAQRELYCQLELGDKVAHAGQFMPYIELLSLGSLLDKCLIETVYEQKL
LERNYEPLAINLTHQSISDTLFHDWLNHFLRSMPQVERICFEIPEAGVYSDLESCVLLCNIIRDNGAKFGIDHFGRQFGS
MSYLQELRPSYVKLDQSFSYYDEASHNSELCRAIINVAKGLDIQVIVTGIQEKAQLERFDELKTDAYQGFIVPPENID

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI226510982, Length=523, Percent_Identity=21.0325047801147, Blast_Score=83, Evalue=7e-17,
Organism=Escherichia coli, GI1789650, Length=423, Percent_Identity=21.2765957446809, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787541, Length=407, Percent_Identity=22.1130221130221, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 72927; Mature: 72796

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLFRQIYSLLFSLFLLVVASLGYVQFTETQSFLTKQMESDLNNTSTSLGLMLTPALQAG
CCHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCC
DTAAAETLVNVIFEGGYYKNIKLTWMVDGKQQEWNNPLKIEDVPQWFINLNLFKTIKKES
CHHHHHHHHHHHHCCCEEECEEEEEEECCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHC
TITSGWLQLAQLEITAHPGFGYHELWRIMSNTIIAFSLLFLVAIFTARLGLTWILKPLHA
HHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSDHAKKIAARQFGPDMPLPKTTELKDLVTAFNSMSAQLKQLFQSLDEEVGSLRKKNLTD
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PASGLPNRQYVVSRLNGWLSEPSSGALFLAKLDWLEEVHSKYGYQVRDETIRLLAEKLVQ
CCCCCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
QLNEITPSVIARIAAFEFAFLVTDVEHDQISKYLQTLIRTINQEISKAGCKPNENFAIGV
HHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEH
AERIGQMKVSDILAQADNALQKALKEHKSFHWFETTEQQLFTREQWRDNLSHAISNKKFK
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE
FRWQPIQFCNGDGVAQRELYCQLELGDKVAHAGQFMPYIELLSLGSLLDKCLIETVYEQK
EEECCCEEECCCCCCCHHEEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LLERNYEPLAINLTHQSISDTLFHDWLNHFLRSMPQVERICFEIPEAGVYSDLESCVLLC
HHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHH
NIIRDNGAKFGIDHFGRQFGSMSYLQELRPSYVKLDQSFSYYDEASHNSELCRAIINVAK
HHHHCCCCEECHHHHHHHHCCHHHHHHHCHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHC
GLDIQVIVTGIQEKAQLERFDELKTDAYQGFIVPPENID
CCCEEEEEECHHHHHHHHHHHHHHHHHCCCEECCCCCCC
>Mature Secondary Structure 
TLFRQIYSLLFSLFLLVVASLGYVQFTETQSFLTKQMESDLNNTSTSLGLMLTPALQAG
CHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCC
DTAAAETLVNVIFEGGYYKNIKLTWMVDGKQQEWNNPLKIEDVPQWFINLNLFKTIKKES
CHHHHHHHHHHHHCCCEEECEEEEEEECCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHC
TITSGWLQLAQLEITAHPGFGYHELWRIMSNTIIAFSLLFLVAIFTARLGLTWILKPLHA
HHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSDHAKKIAARQFGPDMPLPKTTELKDLVTAFNSMSAQLKQLFQSLDEEVGSLRKKNLTD
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PASGLPNRQYVVSRLNGWLSEPSSGALFLAKLDWLEEVHSKYGYQVRDETIRLLAEKLVQ
CCCCCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
QLNEITPSVIARIAAFEFAFLVTDVEHDQISKYLQTLIRTINQEISKAGCKPNENFAIGV
HHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEH
AERIGQMKVSDILAQADNALQKALKEHKSFHWFETTEQQLFTREQWRDNLSHAISNKKFK
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE
FRWQPIQFCNGDGVAQRELYCQLELGDKVAHAGQFMPYIELLSLGSLLDKCLIETVYEQK
EEECCCEEECCCCCCCHHEEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LLERNYEPLAINLTHQSISDTLFHDWLNHFLRSMPQVERICFEIPEAGVYSDLESCVLLC
HHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHH
NIIRDNGAKFGIDHFGRQFGSMSYLQELRPSYVKLDQSFSYYDEASHNSELCRAIINVAK
HHHHCCCCEECHHHHHHHHCCHHHHHHHCHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHC
GLDIQVIVTGIQEKAQLERFDELKTDAYQGFIVPPENID
CCCEEEEEECHHHHHHHHHHHHHHHHHCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]