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The map label for this gene is qseB [H]

Identifier: 117918698

GI number: 117918698

Start: 274543

End: 275205

Strand: Reverse

Name: qseB [H]

Synonym: Shewana3_0241

Alternate gene names: 117918698

Gene position: 275205-274543 (Counterclockwise)

Preceding gene: 117918699

Following gene: 117918697

Centisome position: 5.53

GC content: 52.19

Gene sequence:

>663_bases
ATGCGCTTACTCTTAATTGAAGACGATACTGACTTAGTGGCTCGCCTCATCCCCGCCCTTAACAAGGCGGGCTACACGGT
TGAACATGCCAATAACGGTATCGATGGCGCGTTTCTTGGTGAGGAAGAAACCTTCGAAGCGGTGATCCTCGATTTAGGCT
TGCCCGGTAAGCCGGGCTTAAGCGTACTGAGCCAATGGCGCCAAAAGGGCTTGCTGATGCCAGTGTTAATTCTTACGGCT
CGCGATGCTTGGCACGAACGCGTCGATGGCCTTAAGGCCGGCGCCGATGATTATCTCGGCAAACCATTCCATGTAGAGGA
GCTGCTCGCCAGATTGGAAGCGCTGATCCGCCGCCACTTTGGCCGCGCCGATAATCTGCTGCAACATGCAGGCGTCTCCC
TCGATGTGGATAAACAAGCGGTGACCAATGCCGAAGGGGATGTTATCGAGCTGACTAAGATTGAGTATCGCCTGCTGCAT
TATTTAATGGCCAACCCGACTAAGATTGTCTCCAAATCCGAGTTGAGTGAGCGCATTTACGAAGAGGAACAAATCAAAGA
CAGCAATGTGATTGAAGTGTACATCAACCGACTCCGCCAACGCCTAGGCAAAGACTATATCGAAACGCGACGCGGCCAAG
GTTATCGACTCAAGGATGCCTAA

Upstream 100 bases:

>100_bases
GCATCATCTATGAACTCGAAATCCTGCGCGACGATGGCATCGTCTATGAGATTAAGATCGATGCCAAAACGGGTGAATGG
CTTAAGGAAAAGGTCGACTG

Downstream 100 bases:

>100_bases
GCGTGTATTCACTCAAAGCCTATCTCACCCGCAATCTGCTTATCACCCTCACCTGTGCCATGGCGCTATTGTTGTATTTA
CTGTTTCAAGGCATTCAAAT

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MRLLLIEDDTDLVARLIPALNKAGYTVEHANNGIDGAFLGEEETFEAVILDLGLPGKPGLSVLSQWRQKGLLMPVLILTA
RDAWHERVDGLKAGADDYLGKPFHVEELLARLEALIRRHFGRADNLLQHAGVSLDVDKQAVTNAEGDVIELTKIEYRLLH
YLMANPTKIVSKSELSERIYEEEQIKDSNVIEVYINRLRQRLGKDYIETRRGQGYRLKDA

Sequences:

>Translated_220_residues
MRLLLIEDDTDLVARLIPALNKAGYTVEHANNGIDGAFLGEEETFEAVILDLGLPGKPGLSVLSQWRQKGLLMPVLILTA
RDAWHERVDGLKAGADDYLGKPFHVEELLARLEALIRRHFGRADNLLQHAGVSLDVDKQAVTNAEGDVIELTKIEYRLLH
YLMANPTKIVSKSELSERIYEEEQIKDSNVIEVYINRLRQRLGKDYIETRRGQGYRLKDA
>Mature_220_residues
MRLLLIEDDTDLVARLIPALNKAGYTVEHANNGIDGAFLGEEETFEAVILDLGLPGKPGLSVLSQWRQKGLLMPVLILTA
RDAWHERVDGLKAGADDYLGKPFHVEELLARLEALIRRHFGRADNLLQHAGVSLDVDKQAVTNAEGDVIELTKIEYRLLH
YLMANPTKIVSKSELSERIYEEEQIKDSNVIEVYINRLRQRLGKDYIETRRGQGYRLKDA

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC. Currently it is not known whether this effect is direct or not [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=217, Percent_Identity=45.6221198156682, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1787375, Length=219, Percent_Identity=36.986301369863, Blast_Score=160, Evalue=7e-41,
Organism=Escherichia coli, GI1790552, Length=217, Percent_Identity=40.0921658986175, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI1786784, Length=225, Percent_Identity=35.1111111111111, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI87082012, Length=221, Percent_Identity=34.3891402714932, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1786599, Length=224, Percent_Identity=30.8035714285714, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=32.8828828828829, Blast_Score=110, Evalue=6e-26,
Organism=Escherichia coli, GI1787229, Length=224, Percent_Identity=29.0178571428571, Blast_Score=100, Evalue=5e-23,
Organism=Escherichia coli, GI1789809, Length=226, Percent_Identity=30.9734513274336, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1790860, Length=221, Percent_Identity=29.8642533936652, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI2367329, Length=231, Percent_Identity=32.034632034632, Blast_Score=98, Evalue=3e-22,
Organism=Escherichia coli, GI1788394, Length=221, Percent_Identity=29.4117647058824, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1790863, Length=228, Percent_Identity=28.5087719298246, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1790299, Length=115, Percent_Identity=32.1739130434783, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24885; Mature: 24885

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLLIEDDTDLVARLIPALNKAGYTVEHANNGIDGAFLGEEETFEAVILDLGLPGKPGL
CEEEEEECCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHEEECCCCCCCCH
SVLSQWRQKGLLMPVLILTARDAWHERVDGLKAGADDYLGKPFHVEELLARLEALIRRHF
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHC
GRADNLLQHAGVSLDVDKQAVTNAEGDVIELTKIEYRLLHYLMANPTKIVSKSELSERIY
CCHHHHHHHCCCCCCCCHHHHCCCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
EEEQIKDSNVIEVYINRLRQRLGKDYIETRRGQGYRLKDA
HHHHCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCEECCCC
>Mature Secondary Structure
MRLLLIEDDTDLVARLIPALNKAGYTVEHANNGIDGAFLGEEETFEAVILDLGLPGKPGL
CEEEEEECCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHEEECCCCCCCCH
SVLSQWRQKGLLMPVLILTARDAWHERVDGLKAGADDYLGKPFHVEELLARLEALIRRHF
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHC
GRADNLLQHAGVSLDVDKQAVTNAEGDVIELTKIEYRLLHYLMANPTKIVSKSELSERIY
CCHHHHHHHCCCCCCCCHHHHCCCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
EEEQIKDSNVIEVYINRLRQRLGKDYIETRRGQGYRLKDA
HHHHCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796; 11929534 [H]