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The map label for this gene is 117918495

Identifier: 117918495

GI number: 117918495

Start: 42976

End: 44100

Strand: Direct

Name: 117918495

Synonym: Shewana3_0036

Alternate gene names: NA

Gene position: 42976-44100 (Clockwise)

Preceding gene: 117918489

Following gene: 117918496

Centisome position: 0.86

GC content: 48.27

Gene sequence:

>1125_bases
ATGGACCGCACCATGAAACGGCTAATTTTACTTGCGTTAATGACATTTAATTGCACGTTGGTTTCCGCTGATACTCTCAC
GCTGAAAGCAGGGCATCCTGAGTCATATGTGGTAAAAAAGGGCGATACCCTGTGGGATATCTCGGCAACCTTTTTAAATG
ACCCTTGGAAGTGGCCACGTTTATGGGATGTTAACCCCCAAATTGCTAACCCTCATTTAATTTACCCCGGCGATCAGCTC
ACTTTAGTCTTTATCGATGGCCAACCCAGATTAGTGCGCAATGGCGCTAACGAGGGAAAACCCCATATTCGCAAAACCCC
TGAGGGGCGCGTGATTGCTAAGAGCAATGCGGTTCCTGCGGTTGACTTAGCGTTAATCCAAAACTATCTGGTGCAAAACC
GTGTGGTGGATGCCGACTGGTTTGCACAGCAACCTATGGTGCTCGCGGGTGAGAGCCCTTCACGTCACCATGTGGTTGGC
GATGTGATTTATATCGACAGCGAACTGCCCTTAAACCAAAAGCTGGGCATGTATGAACGCGGTCGTGACTTCTTCAATAA
ACAAACGGGTGAAGCCTTAGGACAAGAAGCGATTCTGGCATCGACTGGCCAGGTTATCGAATCTGGCAAAGTGTCTAAGG
TAAAAATCCTCAGCAACTACCGTGAAACCAAGGCGGGTTTTAGGGCGTTGCCGATGGAAGATGAAGCCTTAATGTCTGCC
TATTTTACGCCAAAACCTGCAGAGCTTAAGACACCTGCGACCGTACTGGCGATTGAATCGAAAATGCGTGAGGCGGGTAA
GCTAAATGTGGTGTACTTAGATAAAGGCACGCAGGATGGTGTTGAGCCAGGTGAAGTGTTCTCCATTTACCGCGATGGCG
AAGAAATTGTGATCAATAACGATGGTCAACCCGTACCTGCGGCCGAGCGCACCGCCTATGACAATGTGGTGGCATCACTG
TCGTCAGATCGCGCCATTAAGATGCCTGATATTTACCATGGAAAACTCTTAGTCTTTAAGGTATTTGATAAAGCGAGCTT
AGGTTTAGTTGTCTCGACGGAACGTTCTGTTCGGGTCGACGATAAATTAATCGCGCCGGACTCCTTAGCCTTTAGAGGTG
AATAA

Upstream 100 bases:

>100_bases
AATCTCAATCAGTTGGTTATACTGACTGAGGCTAATGGGCTAATTTTAATCTTTAGTGCCTATCAATAACAGTAAAAGCT
CGATTTAAGAGCTAAACAAC

Downstream 100 bases:

>100_bases
TCCCTGAACATTTGGTCGATTGGTTAATTGTTAATGCGGTATCTGGGCTAGGACCCGCTCGGACACAACAATTATTAACG
CACATGGATGTGGACGACCT

Product: peptidoglycan-binding LysM

Products: NA

Alternate protein names: LysM Domain Protein; Cell Wall Degradation; LysM Motif-Containing Protein; Protein Containing LysM Domain; Signal Peptide Protein; LysM Family Cell Wall Degradation Protein; Lysin Domain-Containing Protein; Signal Peptide Protein LysM Domain Protein; Secreted Protein

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MDRTMKRLILLALMTFNCTLVSADTLTLKAGHPESYVVKKGDTLWDISATFLNDPWKWPRLWDVNPQIANPHLIYPGDQL
TLVFIDGQPRLVRNGANEGKPHIRKTPEGRVIAKSNAVPAVDLALIQNYLVQNRVVDADWFAQQPMVLAGESPSRHHVVG
DVIYIDSELPLNQKLGMYERGRDFFNKQTGEALGQEAILASTGQVIESGKVSKVKILSNYRETKAGFRALPMEDEALMSA
YFTPKPAELKTPATVLAIESKMREAGKLNVVYLDKGTQDGVEPGEVFSIYRDGEEIVINNDGQPVPAAERTAYDNVVASL
SSDRAIKMPDIYHGKLLVFKVFDKASLGLVVSTERSVRVDDKLIAPDSLAFRGE

Sequences:

>Translated_374_residues
MDRTMKRLILLALMTFNCTLVSADTLTLKAGHPESYVVKKGDTLWDISATFLNDPWKWPRLWDVNPQIANPHLIYPGDQL
TLVFIDGQPRLVRNGANEGKPHIRKTPEGRVIAKSNAVPAVDLALIQNYLVQNRVVDADWFAQQPMVLAGESPSRHHVVG
DVIYIDSELPLNQKLGMYERGRDFFNKQTGEALGQEAILASTGQVIESGKVSKVKILSNYRETKAGFRALPMEDEALMSA
YFTPKPAELKTPATVLAIESKMREAGKLNVVYLDKGTQDGVEPGEVFSIYRDGEEIVINNDGQPVPAAERTAYDNVVASL
SSDRAIKMPDIYHGKLLVFKVFDKASLGLVVSTERSVRVDDKLIAPDSLAFRGE
>Mature_374_residues
MDRTMKRLILLALMTFNCTLVSADTLTLKAGHPESYVVKKGDTLWDISATFLNDPWKWPRLWDVNPQIANPHLIYPGDQL
TLVFIDGQPRLVRNGANEGKPHIRKTPEGRVIAKSNAVPAVDLALIQNYLVQNRVVDADWFAQQPMVLAGESPSRHHVVG
DVIYIDSELPLNQKLGMYERGRDFFNKQTGEALGQEAILASTGQVIESGKVSKVKILSNYRETKAGFRALPMEDEALMSA
YFTPKPAELKTPATVLAIESKMREAGKLNVVYLDKGTQDGVEPGEVFSIYRDGEEIVINNDGQPVPAAERTAYDNVVASL
SSDRAIKMPDIYHGKLLVFKVFDKASLGLVVSTERSVRVDDKLIAPDSLAFRGE

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41448; Mature: 41448

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRTMKRLILLALMTFNCTLVSADTLTLKAGHPESYVVKKGDTLWDISATFLNDPWKWPR
CCHHHHHHHHHHHHHHCEEEEECCEEEEECCCCCCEEEECCCEEEEEEEHCCCCCCCCCE
LWDVNPQIANPHLIYPGDQLTLVFIDGQPRLVRNGANEGKPHIRKTPEGRVIAKSNAVPA
EEECCCCCCCCEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCH
VDLALIQNYLVQNRVVDADWFAQQPMVLAGESPSRHHVVGDVIYIDSELPLNQKLGMYER
HHHHHHHHHHHHCCEECHHHHCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCHHH
GRDFFNKQTGEALGQEAILASTGQVIESGKVSKVKILSNYRETKAGFRALPMEDEALMSA
HHHHHHHHHHHHHCCHHEECCCCHHHHCCCCEEEEEEHHHHHHHCCCEECCCCCHHHHHH
YFTPKPAELKTPATVLAIESKMREAGKLNVVYLDKGTQDGVEPGEVFSIYRDGEEIVINN
CCCCCCCCCCCCEEEEEEHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEEECCCEEEECC
DGQPVPAAERTAYDNVVASLSSDRAIKMPDIYHGKLLVFKVFDKASLGLVVSTERSVRVD
CCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEEEECCCCCEEEEECCCCEECC
DKLIAPDSLAFRGE
CEEECCCCEEECCC
>Mature Secondary Structure
MDRTMKRLILLALMTFNCTLVSADTLTLKAGHPESYVVKKGDTLWDISATFLNDPWKWPR
CCHHHHHHHHHHHHHHCEEEEECCEEEEECCCCCCEEEECCCEEEEEEEHCCCCCCCCCE
LWDVNPQIANPHLIYPGDQLTLVFIDGQPRLVRNGANEGKPHIRKTPEGRVIAKSNAVPA
EEECCCCCCCCEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCH
VDLALIQNYLVQNRVVDADWFAQQPMVLAGESPSRHHVVGDVIYIDSELPLNQKLGMYER
HHHHHHHHHHHHCCEECHHHHCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCHHH
GRDFFNKQTGEALGQEAILASTGQVIESGKVSKVKILSNYRETKAGFRALPMEDEALMSA
HHHHHHHHHHHHHCCHHEECCCCHHHHCCCCEEEEEEHHHHHHHCCCEECCCCCHHHHHH
YFTPKPAELKTPATVLAIESKMREAGKLNVVYLDKGTQDGVEPGEVFSIYRDGEEIVINN
CCCCCCCCCCCCEEEEEEHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEEECCCEEEECC
DGQPVPAAERTAYDNVVASLSSDRAIKMPDIYHGKLLVFKVFDKASLGLVVSTERSVRVD
CCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEEEECCCCCEEEEECCCCEECC
DKLIAPDSLAFRGE
CEEECCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA