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The map label for this gene is xerD [H]

Identifier: 117676314

GI number: 117676314

Start: 264486

End: 265601

Strand: Direct

Name: xerD [H]

Synonym: Shewana3_4377

Alternate gene names: 117676314

Gene position: 264486-265601 (Clockwise)

Preceding gene: 117676313

Following gene: 117676315

Centisome position: 94.82

GC content: 48.92

Gene sequence:

>1116_bases
GTGAGCTTATTAACTACGAATAATCACAGCGTTGCACTGTCCTATGGCGAACCTCCGTCAACGCTTAACGATTCGTTAAA
AGACAGTTATCAGCGCTCTACTGACGAGCTACAGGCGCTATTGTCAAAGCCTCTGGCTCAGTTAACCGATGCAGACAAGC
TCCGCATTCGGGAGATTACACAGGCAAAACTCAAGCACTTTCTTGATAATGGCCACCGTACCCGCAGGGCTAATACATGG
CGAGCACTAATGAGCCGGTGGGCTAAGTTTGAAAGTTGGTGTCTTACAAATAACCTAACCCCGTTGCCTGCGACCCCCGA
GGTAGTGGCCACATTCATTGAGTACTACCAGGCATCGTCGTACACCACCTTATCTCAATATGCTTGGGCGATTAACAGTT
TCCATGTGGAGTGTGGTTTGTTGTCCCCTGTGAGCAGTAAGACCGTGCAAGACAAGCAGAATGAAATCAGAATAGTAAAG
CTCGAGTCAGGCGGTTTAGCGCAAGAGCAGGCAACGCCTTTTAGACTTCATCACCTGCAGATGCTCATAGAATCGTATGG
CGAGAGTGAGAGGTTATTAGACAAGCGCAATTTGGCGTTGCTGAACATCGCCTATGAATCGTTGCTTCGTGAATCCGAGC
TGCTTCGGATCAAAGTAGGCCATCTCAAATCCACTTTTGAAGGCGATTATGTGTTGTCAGTGCCTTACACCAAAACCAAT
GACTCGGGTGAAGAAGAGGTAGTGAACATTACACCGCTAGGCTTCAAATTGATTCAGAGGTACATCCAAGGTGCTGGGCT
GACTAAGGAAGACTACTTGTTTCAGCCGATTGGCCGGAGCAATAAAGTCTCGGTTCAAGCCAAGCCGATGTCCACCCGTA
CAGTGGACCGAGTATTTCTGTGGGCATTCGAGAGTTTAGGAATCGACCGTCATTCTGCTTGGTCAGGGCATAGTGCCAGG
ATTGGCGCCGCACAGGACTTACTTGCCGCAGGCTATTCGATAGCCCAAATCCAAGAGAACGGTCGTTGGAAAAGCCCAAT
GATGGTATTGCGGTACGGCAAAGACATTAAGGCAAAGGAAAGTGCGATGGCCAAGATGTTGGCAGAAAGACGGTAG

Upstream 100 bases:

>100_bases
GATACGATTGGCGCAAAATCCGTGGATGCTGCGATTGATGAATTACTGAGTTTTTACAAGGACGAACACCCCGCATTTTC
AGCAGACAGGGAGGCATTAG

Downstream 100 bases:

>100_bases
TCAGATTCAACCTCCATTTCTATGTGAACCTGACAATTATTGGCTTAATATTAGTAGGTTAAACAATTTAAAACAGGAAT
GGGAACTGTGAAGAAAGCGA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MSLLTTNNHSVALSYGEPPSTLNDSLKDSYQRSTDELQALLSKPLAQLTDADKLRIREITQAKLKHFLDNGHRTRRANTW
RALMSRWAKFESWCLTNNLTPLPATPEVVATFIEYYQASSYTTLSQYAWAINSFHVECGLLSPVSSKTVQDKQNEIRIVK
LESGGLAQEQATPFRLHHLQMLIESYGESERLLDKRNLALLNIAYESLLRESELLRIKVGHLKSTFEGDYVLSVPYTKTN
DSGEEEVVNITPLGFKLIQRYIQGAGLTKEDYLFQPIGRSNKVSVQAKPMSTRTVDRVFLWAFESLGIDRHSAWSGHSAR
IGAAQDLLAAGYSIAQIQENGRWKSPMMVLRYGKDIKAKESAMAKMLAERR

Sequences:

>Translated_371_residues
MSLLTTNNHSVALSYGEPPSTLNDSLKDSYQRSTDELQALLSKPLAQLTDADKLRIREITQAKLKHFLDNGHRTRRANTW
RALMSRWAKFESWCLTNNLTPLPATPEVVATFIEYYQASSYTTLSQYAWAINSFHVECGLLSPVSSKTVQDKQNEIRIVK
LESGGLAQEQATPFRLHHLQMLIESYGESERLLDKRNLALLNIAYESLLRESELLRIKVGHLKSTFEGDYVLSVPYTKTN
DSGEEEVVNITPLGFKLIQRYIQGAGLTKEDYLFQPIGRSNKVSVQAKPMSTRTVDRVFLWAFESLGIDRHSAWSGHSAR
IGAAQDLLAAGYSIAQIQENGRWKSPMMVLRYGKDIKAKESAMAKMLAERR
>Mature_370_residues
SLLTTNNHSVALSYGEPPSTLNDSLKDSYQRSTDELQALLSKPLAQLTDADKLRIREITQAKLKHFLDNGHRTRRANTWR
ALMSRWAKFESWCLTNNLTPLPATPEVVATFIEYYQASSYTTLSQYAWAINSFHVECGLLSPVSSKTVQDKQNEIRIVKL
ESGGLAQEQATPFRLHHLQMLIESYGESERLLDKRNLALLNIAYESLLRESELLRIKVGHLKSTFEGDYVLSVPYTKTND
SGEEEVVNITPLGFKLIQRYIQGAGLTKEDYLFQPIGRSNKVSVQAKPMSTRTVDRVFLWAFESLGIDRHSAWSGHSARI
GAAQDLLAAGYSIAQIQENGRWKSPMMVLRYGKDIKAKESAMAKMLAERR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 41959; Mature: 41828

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLTTNNHSVALSYGEPPSTLNDSLKDSYQRSTDELQALLSKPLAQLTDADKLRIREIT
CCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
QAKLKHFLDNGHRTRRANTWRALMSRWAKFESWCLTNNLTPLPATPEVVATFIEYYQASS
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC
YTTLSQYAWAINSFHVECGLLSPVSSKTVQDKQNEIRIVKLESGGLAQEQATPFRLHHLQ
CCHHHHHHHHHHCEEEEEEECCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHH
MLIESYGESERLLDKRNLALLNIAYESLLRESELLRIKVGHLKSTFEGDYVLSVPYTKTN
HHHHHHCCHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCCCCCC
DSGEEEVVNITPLGFKLIQRYIQGAGLTKEDYLFQPIGRSNKVSVQAKPMSTRTVDRVFL
CCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEECCCCHHHHHHHHH
WAFESLGIDRHSAWSGHSARIGAAQDLLAAGYSIAQIQENGRWKSPMMVLRYGKDIKAKE
HHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHEEHHCCCCCCCCEEEEECCCCCCHHH
SAMAKMLAERR
HHHHHHHHHCC
>Mature Secondary Structure 
SLLTTNNHSVALSYGEPPSTLNDSLKDSYQRSTDELQALLSKPLAQLTDADKLRIREIT
CEEECCCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
QAKLKHFLDNGHRTRRANTWRALMSRWAKFESWCLTNNLTPLPATPEVVATFIEYYQASS
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC
YTTLSQYAWAINSFHVECGLLSPVSSKTVQDKQNEIRIVKLESGGLAQEQATPFRLHHLQ
CCHHHHHHHHHHCEEEEEEECCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHH
MLIESYGESERLLDKRNLALLNIAYESLLRESELLRIKVGHLKSTFEGDYVLSVPYTKTN
HHHHHHCCHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCCCCCC
DSGEEEVVNITPLGFKLIQRYIQGAGLTKEDYLFQPIGRSNKVSVQAKPMSTRTVDRVFL
CCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEECCCCHHHHHHHHH
WAFESLGIDRHSAWSGHSARIGAAQDLLAAGYSIAQIQENGRWKSPMMVLRYGKDIKAKE
HHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHEEHHCCCCCCCCEEEEECCCCCCHHH
SAMAKMLAERR
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]