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The map label for this gene is xerD [H]

Identifier: 117676304

GI number: 117676304

Start: 255706

End: 256713

Strand: Reverse

Name: xerD [H]

Synonym: Shewana3_4367

Alternate gene names: 117676304

Gene position: 256713-255706 (Counterclockwise)

Preceding gene: 117676307

Following gene: 117676303

Centisome position: 92.03

GC content: 55.26

Gene sequence:

>1008_bases
ATGGATAACTACACACCCAAACTCACATCGGATTCGCCATTACGTAGTGAGCAATCAGTTTTGCCGTCGCTGGCAGAATC
CGACTCACTGCGCCACTATCTGCAAGCGGCGACCTCCAATAACACGCGAACAGCCTACCGTTCAGCGATTCGGCAGTTCG
AAAAATGGGGCGGGCGGTTGCCCACGGATCGGGATACCCTGGTGCGTTACCTGGTGGCCAAGGCCGATGTGCTGAATAGC
CGGACTCTCGCCCTTCACCTCACGGCCGTTAGCCAATGGCACCACTACCAAGGGTTGACTGACCCGGTTCGTGATCCGCT
GGTATGTAAAACCATGGAGGGCATTCGCCGCACCCATGGACAGCCCAAGCGCAAGGCCAAGGCGTTGCGCTTGGAGCACA
TCGCCCAACTAGTAAATTACTTGCGGCACTTACCGGACAACAAAAAGAAATACCGGGATATTGCCTTGGTACTCACCGGG
TTCTTCGGCGCCTTGCGTCGCAGTGAGCTGGTTGCTCTTCAGGTCAATGATCTGGTTTGGGAGCCGGAGGGGCTGCTCAT
CCGGTTGCCGCGCTCCAAGACCGACCAGCAAGGCATGGGTTTAATGCGAGCTTTACCTTACGGAAAGGCCGCTTGTTGTC
CGGCTACCGCCGTGAAAACTTGGTTAGATGCAGCGGGCATCACCAGCGGTCCGGTGTTTCGTCCCACCAACCGCTGGGAT
CACATTCAGGAAAAAGCGCTGGCTCCAGGTGCGGTCAATGCTTTGCTCAAAACGCTGGGGCAAGCCTGTGAGTTTGATTT
TGTGCCTGAACTCAGTAGCCACAGTTTCCGTAGAGGGTTATCCACATCGGCAGCGCGTGAGCGAGTGGATTTTGAGTTGA
TCAAGAAACAAGGCGGCTGGAAGAGCGATGCCACCGTCTGGGAGTATATCGAGGAAGGCCAGCAGCTCAGCAATAATGCG
TCAATTATCTTAATGGAGAAGATGGCAACCCTGATGGATGCTGAATGA

Upstream 100 bases:

>100_bases
TAATGAATGTTATCGTGGGTTATGAGTGAGAAATGAAAAATTGATGTTTGTAACACCAGTACATTGGTGCCTTCCAGCGA
CCCACAGAAAAGGGATAACC

Downstream 100 bases:

>100_bases
TTCGGTCAACATTCGGGGCAGAATCAATGTATCGGGCCAAACCCAAATACCAAAGCTGGTAATGTTACCGCCACGATCAT
GGATCATTCTGGCCGCTGTA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MDNYTPKLTSDSPLRSEQSVLPSLAESDSLRHYLQAATSNNTRTAYRSAIRQFEKWGGRLPTDRDTLVRYLVAKADVLNS
RTLALHLTAVSQWHHYQGLTDPVRDPLVCKTMEGIRRTHGQPKRKAKALRLEHIAQLVNYLRHLPDNKKKYRDIALVLTG
FFGALRRSELVALQVNDLVWEPEGLLIRLPRSKTDQQGMGLMRALPYGKAACCPATAVKTWLDAAGITSGPVFRPTNRWD
HIQEKALAPGAVNALLKTLGQACEFDFVPELSSHSFRRGLSTSAARERVDFELIKKQGGWKSDATVWEYIEEGQQLSNNA
SIILMEKMATLMDAE

Sequences:

>Translated_335_residues
MDNYTPKLTSDSPLRSEQSVLPSLAESDSLRHYLQAATSNNTRTAYRSAIRQFEKWGGRLPTDRDTLVRYLVAKADVLNS
RTLALHLTAVSQWHHYQGLTDPVRDPLVCKTMEGIRRTHGQPKRKAKALRLEHIAQLVNYLRHLPDNKKKYRDIALVLTG
FFGALRRSELVALQVNDLVWEPEGLLIRLPRSKTDQQGMGLMRALPYGKAACCPATAVKTWLDAAGITSGPVFRPTNRWD
HIQEKALAPGAVNALLKTLGQACEFDFVPELSSHSFRRGLSTSAARERVDFELIKKQGGWKSDATVWEYIEEGQQLSNNA
SIILMEKMATLMDAE
>Mature_335_residues
MDNYTPKLTSDSPLRSEQSVLPSLAESDSLRHYLQAATSNNTRTAYRSAIRQFEKWGGRLPTDRDTLVRYLVAKADVLNS
RTLALHLTAVSQWHHYQGLTDPVRDPLVCKTMEGIRRTHGQPKRKAKALRLEHIAQLVNYLRHLPDNKKKYRDIALVLTG
FFGALRRSELVALQVNDLVWEPEGLLIRLPRSKTDQQGMGLMRALPYGKAACCPATAVKTWLDAAGITSGPVFRPTNRWD
HIQEKALAPGAVNALLKTLGQACEFDFVPELSSHSFRRGLSTSAARERVDFELIKKQGGWKSDATVWEYIEEGQQLSNNA
SIILMEKMATLMDAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37664; Mature: 37664

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNYTPKLTSDSPLRSEQSVLPSLAESDSLRHYLQAATSNNTRTAYRSAIRQFEKWGGRL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
PTDRDTLVRYLVAKADVLNSRTLALHLTAVSQWHHYQGLTDPVRDPLVCKTMEGIRRTHG
CCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHCC
QPKRKAKALRLEHIAQLVNYLRHLPDNKKKYRDIALVLTGFFGALRRSELVALQVNDLVW
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEE
EPEGLLIRLPRSKTDQQGMGLMRALPYGKAACCPATAVKTWLDAAGITSGPVFRPTNRWD
CCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHH
HIQEKALAPGAVNALLKTLGQACEFDFVPELSSHSFRRGLSTSAARERVDFELIKKQGGW
HHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
KSDATVWEYIEEGQQLSNNASIILMEKMATLMDAE
CCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCC
>Mature Secondary Structure
MDNYTPKLTSDSPLRSEQSVLPSLAESDSLRHYLQAATSNNTRTAYRSAIRQFEKWGGRL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
PTDRDTLVRYLVAKADVLNSRTLALHLTAVSQWHHYQGLTDPVRDPLVCKTMEGIRRTHG
CCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHCC
QPKRKAKALRLEHIAQLVNYLRHLPDNKKKYRDIALVLTGFFGALRRSELVALQVNDLVW
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEE
EPEGLLIRLPRSKTDQQGMGLMRALPYGKAACCPATAVKTWLDAAGITSGPVFRPTNRWD
CCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHH
HIQEKALAPGAVNALLKTLGQACEFDFVPELSSHSFRRGLSTSAARERVDFELIKKQGGW
HHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
KSDATVWEYIEEGQQLSNNASIILMEKMATLMDAE
CCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]