Click here to switch to the map view.

The map label for this gene is traB [H]

Identifier: 117676197

GI number: 117676197

Start: 134681

End: 136039

Strand: Reverse

Name: traB [H]

Synonym: Shewana3_4258

Alternate gene names: 117676197

Gene position: 136039-134681 (Counterclockwise)

Preceding gene: 117676198

Following gene: 117676196

Centisome position: 48.77

GC content: 49.96

Gene sequence:

>1359_bases
ATGCAAGCGTTACAGGATTTAAAAACCAAGTGGCTTGCGCTTCCATCGAATCAGCGCACTATCGCGTTAATCGTGATATT
GGCAATACCTGCTTATCTTGTGGCTGAAGCCATTTTCCCTTCAGCGCCGAAAACCCCTGTCAGCTCAATCCCAGCCAGAG
CGAAGCCTATGTTTATGAGTACCATGGGGAGCGAGCGCTTGGAGTCCACCCAGACTTCCGGCCAGCTCATAGCTATGCGA
AAGAAAATTCAAGAGCGTGAAAAAGCGATTGATGCACAGTACACCGAGCAAAAAGCTAGTGAAAAGCGAATTCAGCAACA
GGTCGATACCCTGCAAATGTCTCAGCTTGAATCACAAAAACGCCTCGAGACCATCGCGCATCAAATGCAAATGCTGGTTG
AACAACAAAGCAAAAATGCCGCAACAGCTCGAGACAGTGTGAGCGCGAAAGGAGCTCGACCAGAAAATATCGCCCAGCAA
GCACCTTCATTGCCAAGTACCGAGTTTAGCCTAGACCCAATGGCAAGCCTTAAGTCGAATGTCGCCATGACCCCGCCAGC
GTCAAAGACTTTAACCATGAACCGTGGTGACGTGAGTTTAGGTAAGGCCGCTGCCACAGGTGATGAAGCAAATGTTGGTA
ATGCGTCAACAGCCAAAAACCAAGTCGCAGCCAAAGCAAAACAAGCGATTTCTCAAGAGAACACAGGTTCTATCAAGAAA
ACTGAAAAAGAGCCTGAGACATGGTTGTCAGCTGGCACAGTAATACCAACCGTCTTGCTTACGGGTCAACATGTACCTAC
CAGTTCATCGGCGCAATCAAACCCAGCTCCAGTGTTATTAAAAATCGTAGACGTTGGGGTGATGCCTAACGGTTTCACTA
TCGATCTAGTGGGTTGCACAGTGATTGGCGCGGCCCGTGGTAGTGCCAGTACCCGTCGTGTCGAAATCCGCGCTGAGAGT
ATCAGCTGTATCGACCAGAGAGGTCGTGCGATTGAACAGCCGTTCATTGCCGCAGTGCAAGGTCAAGACGGTCATAGCGG
TATCCCAGCCAAGTTAGTAACACTCTACGGTGAAGTGGTGAAGCAATCCTTCTGGGCAGGCATCTATGGCACTGGCGCCC
AAACCCTCACACAAGCCGCGACCAATCGAGTGTCTGGTGATGTGGTTTATGACGGCACCTATTTCAAAAACACGGCGACC
AGCTCACTTGCTGGTGGCTCAAGTACCGCATTCGATAAGATTGCTGACTTCTACCTGCAGTTAGCCGACGAAGCCAGGCC
GTATCTGGAAATGCACGGCGGCATTGAAGGTGTTGACCTCATTGTTCAACGCGGTGTTAGTCTCAAATATAAGGGTTAA

Upstream 100 bases:

>100_bases
TTAGGCCCAAGGGAAAGCACCGAAGTGTACATTCTGCGTGACCGCAGCTACTTCGAGCGCCAAATGAAAGTTCCACGTCG
TAGTCGTGTAGGAGGTTAAC

Downstream 100 bases:

>100_bases
GCAATGACAACCGAAAACGTAAATTCTGAAAAATTGGAACCGACTATCGGCGCTCTGGCTGAGCCAGAGCAAGCCGCTCC
CGCTGAGGTTGCACAATCCG

Product: TraB pilus assembly family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MQALQDLKTKWLALPSNQRTIALIVILAIPAYLVAEAIFPSAPKTPVSSIPARAKPMFMSTMGSERLESTQTSGQLIAMR
KKIQEREKAIDAQYTEQKASEKRIQQQVDTLQMSQLESQKRLETIAHQMQMLVEQQSKNAATARDSVSAKGARPENIAQQ
APSLPSTEFSLDPMASLKSNVAMTPPASKTLTMNRGDVSLGKAAATGDEANVGNASTAKNQVAAKAKQAISQENTGSIKK
TEKEPETWLSAGTVIPTVLLTGQHVPTSSSAQSNPAPVLLKIVDVGVMPNGFTIDLVGCTVIGAARGSASTRRVEIRAES
ISCIDQRGRAIEQPFIAAVQGQDGHSGIPAKLVTLYGEVVKQSFWAGIYGTGAQTLTQAATNRVSGDVVYDGTYFKNTAT
SSLAGGSSTAFDKIADFYLQLADEARPYLEMHGGIEGVDLIVQRGVSLKYKG

Sequences:

>Translated_452_residues
MQALQDLKTKWLALPSNQRTIALIVILAIPAYLVAEAIFPSAPKTPVSSIPARAKPMFMSTMGSERLESTQTSGQLIAMR
KKIQEREKAIDAQYTEQKASEKRIQQQVDTLQMSQLESQKRLETIAHQMQMLVEQQSKNAATARDSVSAKGARPENIAQQ
APSLPSTEFSLDPMASLKSNVAMTPPASKTLTMNRGDVSLGKAAATGDEANVGNASTAKNQVAAKAKQAISQENTGSIKK
TEKEPETWLSAGTVIPTVLLTGQHVPTSSSAQSNPAPVLLKIVDVGVMPNGFTIDLVGCTVIGAARGSASTRRVEIRAES
ISCIDQRGRAIEQPFIAAVQGQDGHSGIPAKLVTLYGEVVKQSFWAGIYGTGAQTLTQAATNRVSGDVVYDGTYFKNTAT
SSLAGGSSTAFDKIADFYLQLADEARPYLEMHGGIEGVDLIVQRGVSLKYKG
>Mature_452_residues
MQALQDLKTKWLALPSNQRTIALIVILAIPAYLVAEAIFPSAPKTPVSSIPARAKPMFMSTMGSERLESTQTSGQLIAMR
KKIQEREKAIDAQYTEQKASEKRIQQQVDTLQMSQLESQKRLETIAHQMQMLVEQQSKNAATARDSVSAKGARPENIAQQ
APSLPSTEFSLDPMASLKSNVAMTPPASKTLTMNRGDVSLGKAAATGDEANVGNASTAKNQVAAKAKQAISQENTGSIKK
TEKEPETWLSAGTVIPTVLLTGQHVPTSSSAQSNPAPVLLKIVDVGVMPNGFTIDLVGCTVIGAARGSASTRRVEIRAES
ISCIDQRGRAIEQPFIAAVQGQDGHSGIPAKLVTLYGEVVKQSFWAGIYGTGAQTLTQAATNRVSGDVVYDGTYFKNTAT
SSLAGGSSTAFDKIADFYLQLADEARPYLEMHGGIEGVDLIVQRGVSLKYKG

Specific function: Involved in F pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the traB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 48210; Mature: 48210

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQALQDLKTKWLALPSNQRTIALIVILAIPAYLVAEAIFPSAPKTPVSSIPARAKPMFMS
CCHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHH
TMGSERLESTQTSGQLIAMRKKIQEREKAIDAQYTEQKASEKRIQQQVDTLQMSQLESQK
HHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLETIAHQMQMLVEQQSKNAATARDSVSAKGARPENIAQQAPSLPSTEFSLDPMASLKSN
HHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHCC
VAMTPPASKTLTMNRGDVSLGKAAATGDEANVGNASTAKNQVAAKAKQAISQENTGSIKK
EEECCCCCCEEEECCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
TEKEPETWLSAGTVIPTVLLTGQHVPTSSSAQSNPAPVLLKIVDVGVMPNGFTIDLVGCT
CCCCHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEE
VIGAARGSASTRRVEIRAESISCIDQRGRAIEQPFIAAVQGQDGHSGIPAKLVTLYGEVV
EEECCCCCCCCEEEEEEHHHHHHHHHCCCHHCCCCEEEEECCCCCCCCCHHHHHHHHHHH
KQSFWAGIYGTGAQTLTQAATNRVSGDVVYDGTYFKNTATSSLAGGSSTAFDKIADFYLQ
HHHHHCCCCCCCHHHHHHHHHHCCCCCEEECCCEECCCCCCCCCCCCCHHHHHHHHHHHH
LADEARPYLEMHGGIEGVDLIVQRGVSLKYKG
HHHHCCHHHHHCCCCHHHHHHHHCCCCEEECC
>Mature Secondary Structure
MQALQDLKTKWLALPSNQRTIALIVILAIPAYLVAEAIFPSAPKTPVSSIPARAKPMFMS
CCHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHH
TMGSERLESTQTSGQLIAMRKKIQEREKAIDAQYTEQKASEKRIQQQVDTLQMSQLESQK
HHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLETIAHQMQMLVEQQSKNAATARDSVSAKGARPENIAQQAPSLPSTEFSLDPMASLKSN
HHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHCC
VAMTPPASKTLTMNRGDVSLGKAAATGDEANVGNASTAKNQVAAKAKQAISQENTGSIKK
EEECCCCCCEEEECCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
TEKEPETWLSAGTVIPTVLLTGQHVPTSSSAQSNPAPVLLKIVDVGVMPNGFTIDLVGCT
CCCCHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEE
VIGAARGSASTRRVEIRAESISCIDQRGRAIEQPFIAAVQGQDGHSGIPAKLVTLYGEVV
EEECCCCCCCCEEEEEEHHHHHHHHHCCCHHCCCCEEEEECCCCCCCCCHHHHHHHHHHH
KQSFWAGIYGTGAQTLTQAATNRVSGDVVYDGTYFKNTATSSLAGGSSTAFDKIADFYLQ
HHHHHCCCCCCCHHHHHHHHHHCCCCCEEECCCEECCCCCCCCCCCCCHHHHHHHHHHHH
LADEARPYLEMHGGIEGVDLIVQRGVSLKYKG
HHHHCCHHHHHCCCCHHHHHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7915817; 8655498 [H]