Click here to switch to the map view.

The map label for this gene is 117676185

Identifier: 117676185

GI number: 117676185

Start: 121277

End: 121765

Strand: Reverse

Name: 117676185

Synonym: Shewana3_4246

Alternate gene names: NA

Gene position: 121765-121277 (Counterclockwise)

Preceding gene: 117676186

Following gene: 117676184

Centisome position: 43.65

GC content: 47.85

Gene sequence:

>489_bases
ATGAAAAAATCCGGTGTCTATGCCGTTGCACTCAAGCAAGTCAAAGCAAAAATCAGCGCTTTACTCGGTTTATCTGTGCC
TAAACCGCCGAAAAATGGTTGGGTGCGCAGTATCCGTGAGGCCTTGGGGATGTCGGGCGCGCAATTAGGTGAACGTCTTA
ATCTCTCTCGTAATCAGGTCTCCATATTGGAGCGTAAAGAAGCTGATGAAACCATCACACTCAAACAACTTAAACAACTG
GCGACCGGGCTCGATGCCGAACTGGTTTATGCGATTGTTCCGCGTCAGTCGATTGATGACATGATAGAAGCGCGCGCTAT
GGAGTTGGCCAAGCAGCGTTTGGCCATGAGCCACCAATCGATGTTTTTAGAAGCACAGCAGTTAACCTCAGAGCAACAAC
AGCAAGCGCTGGTTCAATTAGCCAATGAAATTAAAACGGGCAGCACCCGAGATTTGTGGAAAGTCAGTTTGCAGGAGAAA
TACCAATGA

Upstream 100 bases:

>100_bases
CCCTTGCCGCGTATTAAAAAATAGATACAACAATCTTTATAATGTATGCGAAATTAGATACCATTATCACTGTAGCGTAT
TTAATTTGAGATACAAAATT

Downstream 100 bases:

>100_bases
GTCTGTTTGTTGAACCAGAGGGTGCAACCCAACTAAATGCCGATGATGTTGCCGGGCTGAAATTTGATCACATCACGACT
CGCGAAGAGCTTAATGAGCT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; XRE Family Transcriptional Regulator; HTH-Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator HTH Family

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MKKSGVYAVALKQVKAKISALLGLSVPKPPKNGWVRSIREALGMSGAQLGERLNLSRNQVSILERKEADETITLKQLKQL
ATGLDAELVYAIVPRQSIDDMIEARAMELAKQRLAMSHQSMFLEAQQLTSEQQQQALVQLANEIKTGSTRDLWKVSLQEK
YQ

Sequences:

>Translated_162_residues
MKKSGVYAVALKQVKAKISALLGLSVPKPPKNGWVRSIREALGMSGAQLGERLNLSRNQVSILERKEADETITLKQLKQL
ATGLDAELVYAIVPRQSIDDMIEARAMELAKQRLAMSHQSMFLEAQQLTSEQQQQALVQLANEIKTGSTRDLWKVSLQEK
YQ
>Mature_162_residues
MKKSGVYAVALKQVKAKISALLGLSVPKPPKNGWVRSIREALGMSGAQLGERLNLSRNQVSILERKEADETITLKQLKQL
ATGLDAELVYAIVPRQSIDDMIEARAMELAKQRLAMSHQSMFLEAQQLTSEQQQQALVQLANEIKTGSTRDLWKVSLQEK
YQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18089; Mature: 18089

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSGVYAVALKQVKAKISALLGLSVPKPPKNGWVRSIREALGMSGAQLGERLNLSRNQV
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHH
SILERKEADETITLKQLKQLATGLDAELVYAIVPRQSIDDMIEARAMELAKQRLAMSHQS
HHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MFLEAQQLTSEQQQQALVQLANEIKTGSTRDLWKVSLQEKYQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MKKSGVYAVALKQVKAKISALLGLSVPKPPKNGWVRSIREALGMSGAQLGERLNLSRNQV
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHH
SILERKEADETITLKQLKQLATGLDAELVYAIVPRQSIDDMIEARAMELAKQRLAMSHQS
HHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MFLEAQQLTSEQQQQALVQLANEIKTGSTRDLWKVSLQEKYQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA