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The map label for this gene is ydcM [C]

Identifier: 117676124

GI number: 117676124

Start: 49642

End: 50745

Strand: Reverse

Name: ydcM [C]

Synonym: Shewana3_4184

Alternate gene names: 117676124

Gene position: 50745-49642 (Counterclockwise)

Preceding gene: 117676125

Following gene: 117676122

Centisome position: 18.19

GC content: 47.64

Gene sequence:

>1104_bases
ATGAAAGAGATCGCTATTAAACAACGCTTTTACCCAACGACTGAACAGGCTCAATTGCTTGCGCAGACTTTCGGCTGTGT
GCGTTTCGTTTACAACGCGATCCTTAAATGGCGTACCGACGCTTTCTACAACGAAAGCAAAAAGGTTAACTACAACACGG
CAAGCTCTAAGCTGACCGAACTCAAGAAGCAAACTGAGTTTGAATGGCTTAACAGCGTGTCGTGTGTACCGCTCCAACAA
TCTTTGCGCCATCAACAAACTGCGTTTAAGAACTTCTTTGAAGGAAGGGCGAAGTATCCAGCCTTTAAGAAGAAGTGCAG
CAAGCAAAGCGCAGAATTCACGAAGTCGGCGTTTAAGTTCAAAGATGGCAATATCTACATTGCCAAGTCCAAACAGCCGC
TTGATATTCGCTGGTCGCGTGAACTTCCTAGCGAACCAACTACCGTCACTATCTCGAAAGACAGTGCAGGCCGCTACTTC
GTGTCTATGCTTTGCCGCTTCGAGCCTAAACCACTGCCTGTTACCAAAAAGACAACGGGTATTGATTTGGGTTTGACCGA
CCTTGTGATTACCGCTGACGGGTTTAAATCTGGCAATCCCCGCCATACTGCAAAGTACGAGAAGAAATTGGCTCAGGCGC
AACGCCGCCTTTCCAAGAAGAAGAAAGGAACTGCCAACTTCCACAAAGCCAGAATCAAAGTTGCTCGCATTCAGGCGAAG
ATTGCCGACTGCCGCCGCGACTTTACCCACAAACTCACCACTACGTTGATAAACGAAAACCAAGTGATTAGCTGTGAGAG
TTTGAGCGTTAAAAACATGGTCAAGAATCCGCGACTTGCTAAGGCCATTGGTGACGCCAATTGGGGCGAAATGGTTAGGC
ATCTTGAGTACAAAGCAGAATGGCGCGGCAGAACACTTGTCCAGATTGACAAGTGGTATCCGTCTAGTAAGCGTTGTAAT
TGCTGTGGTCACGTAGTTGATTCTCTACCGTTACATATAAGGCATTGGACTTGTCCAGCGTGTGAAGCGCGCTTAGACCG
TGATACCAATGCCGCTATTAATATCAAAGCCGCTGGGCAAGCGGTGTTAGCTTGTGGAGCGTAA

Upstream 100 bases:

>100_bases
AGGGCGAGGAGGGATAGCGGTTGCTCCGAAGGAGCAAAAACTACCCGATTGGTTAATGTTAATATTTACTTTCACAAAAA
CAACTGTATTCTTGTGAACT

Downstream 100 bases:

>100_bases
GTAAGTCCCGATTGTTCTAATGAACTTCGGGCATAACGCCTTGAAACAAGAATCCCCTTCCTTTAGGGAGGGGAGCAGTC
AATTAGCGCTCTGATTCTCT

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MKEIAIKQRFYPTTEQAQLLAQTFGCVRFVYNAILKWRTDAFYNESKKVNYNTASSKLTELKKQTEFEWLNSVSCVPLQQ
SLRHQQTAFKNFFEGRAKYPAFKKKCSKQSAEFTKSAFKFKDGNIYIAKSKQPLDIRWSRELPSEPTTVTISKDSAGRYF
VSMLCRFEPKPLPVTKKTTGIDLGLTDLVITADGFKSGNPRHTAKYEKKLAQAQRRLSKKKKGTANFHKARIKVARIQAK
IADCRRDFTHKLTTTLINENQVISCESLSVKNMVKNPRLAKAIGDANWGEMVRHLEYKAEWRGRTLVQIDKWYPSSKRCN
CCGHVVDSLPLHIRHWTCPACEARLDRDTNAAINIKAAGQAVLACGA

Sequences:

>Translated_367_residues
MKEIAIKQRFYPTTEQAQLLAQTFGCVRFVYNAILKWRTDAFYNESKKVNYNTASSKLTELKKQTEFEWLNSVSCVPLQQ
SLRHQQTAFKNFFEGRAKYPAFKKKCSKQSAEFTKSAFKFKDGNIYIAKSKQPLDIRWSRELPSEPTTVTISKDSAGRYF
VSMLCRFEPKPLPVTKKTTGIDLGLTDLVITADGFKSGNPRHTAKYEKKLAQAQRRLSKKKKGTANFHKARIKVARIQAK
IADCRRDFTHKLTTTLINENQVISCESLSVKNMVKNPRLAKAIGDANWGEMVRHLEYKAEWRGRTLVQIDKWYPSSKRCN
CCGHVVDSLPLHIRHWTCPACEARLDRDTNAAINIKAAGQAVLACGA
>Mature_367_residues
MKEIAIKQRFYPTTEQAQLLAQTFGCVRFVYNAILKWRTDAFYNESKKVNYNTASSKLTELKKQTEFEWLNSVSCVPLQQ
SLRHQQTAFKNFFEGRAKYPAFKKKCSKQSAEFTKSAFKFKDGNIYIAKSKQPLDIRWSRELPSEPTTVTISKDSAGRYF
VSMLCRFEPKPLPVTKKTTGIDLGLTDLVITADGFKSGNPRHTAKYEKKLAQAQRRLSKKKKGTANFHKARIKVARIQAK
IADCRRDFTHKLTTTLINENQVISCESLSVKNMVKNPRLAKAIGDANWGEMVRHLEYKAEWRGRTLVQIDKWYPSSKRCN
CCGHVVDSLPLHIRHWTCPACEARLDRDTNAAINIKAAGQAVLACGA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=359, Percent_Identity=33.983286908078, Blast_Score=181, Evalue=9e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 41825; Mature: 41825

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEIAIKQRFYPTTEQAQLLAQTFGCVRFVYNAILKWRTDAFYNESKKVNYNTASSKLTE
CCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHH
LKKQTEFEWLNSVSCVPLQQSLRHQQTAFKNFFEGRAKYPAFKKKCSKQSAEFTKSAFKF
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEE
KDGNIYIAKSKQPLDIRWSRELPSEPTTVTISKDSAGRYFVSMLCRFEPKPLPVTKKTTG
ECCCEEEECCCCCCEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
IDLGLTDLVITADGFKSGNPRHTAKYEKKLAQAQRRLSKKKKGTANFHKARIKVARIQAK
CCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
IADCRRDFTHKLTTTLINENQVISCESLSVKNMVKNPRLAKAIGDANWGEMVRHLEYKAE
HHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHH
WRGRTLVQIDKWYPSSKRCNCCGHVVDSLPLHIRHWTCPACEARLDRDTNAAINIKAAGQ
CCCCEEEEEECCCCCCCCCCHHHHHHHCCCEEEEECCCCHHHHHCCCCCCCEEEEEECCC
AVLACGA
EEEECCC
>Mature Secondary Structure
MKEIAIKQRFYPTTEQAQLLAQTFGCVRFVYNAILKWRTDAFYNESKKVNYNTASSKLTE
CCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHH
LKKQTEFEWLNSVSCVPLQQSLRHQQTAFKNFFEGRAKYPAFKKKCSKQSAEFTKSAFKF
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEE
KDGNIYIAKSKQPLDIRWSRELPSEPTTVTISKDSAGRYFVSMLCRFEPKPLPVTKKTTG
ECCCEEEECCCCCCEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
IDLGLTDLVITADGFKSGNPRHTAKYEKKLAQAQRRLSKKKKGTANFHKARIKVARIQAK
CCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
IADCRRDFTHKLTTTLINENQVISCESLSVKNMVKNPRLAKAIGDANWGEMVRHLEYKAE
HHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHH
WRGRTLVQIDKWYPSSKRCNCCGHVVDSLPLHIRHWTCPACEARLDRDTNAAINIKAAGQ
CCCCEEEEEECCCCCCCCCCHHHHHHHCCCEEEEECCCCHHHHHCCCCCCCEEEEEECCC
AVLACGA
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]