| Definition | Shewanella sp. ANA-3 plasmid 1, complete sequence. |
|---|---|
| Accession | NC_008573 |
| Length | 278,942 |
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The map label for this gene is hsdM [C]
Identifier: 117676102
GI number: 117676102
Start: 23291
End: 25915
Strand: Direct
Name: hsdM [C]
Synonym: Shewana3_4162
Alternate gene names: 117676102
Gene position: 23291-25915 (Clockwise)
Preceding gene: 117676101
Following gene: 117676103
Centisome position: 8.35
GC content: 45.07
Gene sequence:
>2625_bases ATGAACAAACAACAACTGGCCGCAAAAATCTGGGAATCAGCAAACCAGATGCGCTCAAAAATCGAAGCTAACGAATACAA AGATTACATCTTAGGTTTCATTTTTTACAAGTACCTGAGCGACCAGTTAGTTCAGTTTGTCACCAAAGAGGGCATGACAC CTGAAGACATTAAAGCCCTCAACGAAGAAGACGCGGACACGGTCAAGTACATTCAAGACAATCTAGGTTATTTCATCGCT TACGATAATTTGTTTGCTACTTGGGTTGATCCTGCATTCGACTTTGACGAGTCTAACGTGCGCGATGCGCTATCCGCCTT TAGCCGTTTGATTTCGCCTACCTACAAAAAATTGTTTGAAGGAATTTTCACCACACTCGAAACGGGTCTTAGCAAACTGG GTGAAAGCGCGGGTAAGCGCACAAAAGCCATTAGCGACCTACTACATTTAATCAAAAGTATCCCAATGAACGGTAAGCAA GGCTATGACGTTCTGGGTTACATCTACGAATACCTGATTGAAAAATTTGCCGCTAATGCCGGTAAAAAAGCCGGTGAGTT CTATACGCCGCATGAAGTCTCGGTATTGATGTCGCACATCATCGCCCATGAATTAAAACACAAAGATACCATCGAGATTT ACGACCCAACGTCGGGCTCGGGTTCGTTACTGATCAATATTGGTGAAGCGGTCGAAAAATACGCCAAAAGCAAAGACAGC ATTACCTATTATGCCCAAGAGCTAAAAGCGAATACCTACAACCTTACCCGTATGAACCTGATCATGCGCGGCATTAAAGC CAGCAATATCAAAACCCGTAACGGTGACACCTTAGAAGACGATTGGCCATACTTTGATGAAAATGATCCGCAAGGTACTT ATCATGCGCTGTATGTGGATGCGGTCGTCTCCAACCCGCCTTACTCACAAGCCTGGGACCCAAGTTTTAAAGACAGCGAT CCACGTTACTCGCGTTTTGGTCTTGCGCCCAAAACCAAAGCCGATTTTGCCTTTTTATTGCACGACCTTTACCACCTAAA ACCCGATGGCATTATGACCATTGTCTTGCCCCACGGCGTACTCTTTAGAGGTGGTGAAGAAGGCGAAATTCGCAAGCAAC TGATTGAGCAAAACCACATTGATGCCATTATCGGCTTACCAGCTAACATCTTTTTTGGTACTGGTATTCCTACCGTTATT TTGGTGCTCAAGCAGAAGCGTGGCTCTATTGACAAACCACAGAATGACGTATTAATTGTGGATGCCTCCAAGCACTTTGT TAAAGAAGGTAAAAACAATAAACTGCAAGCCAGTGACATCAAGCGCATTGTTGATGCGGTCATTAACCGCGACAGCATCG AAAAATTCTCACAAGTGGTGAGTAAGCAAACCTTGCGCGACAATGGCTACAACTTAAACATACCCCGTTATGTAGATTCG TCACCAGCGGCCGAAAGCTGGGATTTACACGCCACTATGCTCGGCGGCATCCCAAATAGCGAAATTGCGCAGTTACACCA ATATTGGCAAGCATTCCCGCAATTGCATGATGCGCTGTTTGTGGCCAAGTCTGCCGCCCACAGTGAATTAGCCATTGCTA AACGAGACGTTAATGCAACCATTACCCAGCACTCACAAGTGGTAGAGTTTGTCACTGCCTACAACCAGGCGTTTGATGGA ACCAATGCCAACAGCAGCTTTGATGACTATTTAAACAATACCCTAATCCAAGGCTGGCAAGCCGTTAACCGTAACCAGCA AGAGCCTGAATTAAGCACAGAGTTATTCACACGCTTAAGCAGTGTTGCCCTCATCGACAAATACCAGGCCTATCAATATT TGAACAACCAATGGCAATTGATTAGTGCTGATTTAGAAATGATGCAAACTGAGGGTTTCGCCGCCACTAAGCAAGTTGAC CCTAATATCGTGGTTAAAAAGGTTAAGGGCAAAGACACCGAAGTACAAGACGGCTGGAAAGGCCACATCATGCCCTTTGA TTTAGTACAACAAACCTACTTGAGCGATGACCTAGCGGCTCTGGCAAAACAAGAAAACCGCCTTGTCGAAATCGGAAGCC TACTTGAGGAAATACTCGAATCTCTAAGCGAAGAAGACAAAGAACAAGACACCGTAAAAGAAAGCAAAGACGGCTTTGCC AATGCCGAAGTGGCCAAGGCGGCCAAAGCCTTCTTGAAAGAACAGAAAGACAGCAAAGTTAAATTTGAAAAGGAAAGCTA CGAAGCCAAGATAATTGCGGCCAATAAACTCATCGATGAAGAAAAAGCTCTGAAAAAAGCGGTCAAAGAAGCACAAGTCG CCCTGCACTTAAAAACCAAAACCACCATCGAAGGCTTAACCGACCAGCAAGTGAACGAATTGCTGCACCTAAAATGGATC GCGCCATTAAGCCAAGAGCTTGCTGCCATGCCAAGTGTCGTGATTTCAGAGTTGACCAACCAAGTACAATCCCTTGCCGA TAAATATGCGGTGACCTATTCGCAAGTGGCGAATGAGATTAAAACCACCGAACAAGAACTAGCTGACATGATGGGCGAAC TCACTGGCAATGAGTTTGATATGCAGGGCTTGAATGAGCTTACCAGTTTGTTGAAGGGTGCATAA
Upstream 100 bases:
>100_bases AAACCCATGGTGTTTAACTCGCAACCCCCCAATTTTGATACGTGCTTTATGTCCTTTAAACATATTGCGACCTCACTCAT TCTGACTATTTAGAGCAAAC
Downstream 100 bases:
>100_bases GATGAGTGTGGAAAAGATGGTGCCGGAGATTCGCTTTGAGGGGTTTAGTGATGAGTGGCAAAGTTTGAGTTTGGATAAAA TTACCGATGTATATGATGGA
Product: type I restriction-modification system, M subunit
Products: NA
Alternate protein names: M.MpnORFDP [H]
Number of amino acids: Translated: 874; Mature: 874
Protein sequence:
>874_residues MNKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTKEGMTPEDIKALNEEDADTVKYIQDNLGYFIA YDNLFATWVDPAFDFDESNVRDALSAFSRLISPTYKKLFEGIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGKQ GYDVLGYIYEYLIEKFAANAGKKAGEFYTPHEVSVLMSHIIAHELKHKDTIEIYDPTSGSGSLLINIGEAVEKYAKSKDS ITYYAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEDDWPYFDENDPQGTYHALYVDAVVSNPPYSQAWDPSFKDSD PRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMTIVLPHGVLFRGGEEGEIRKQLIEQNHIDAIIGLPANIFFGTGIPTVI LVLKQKRGSIDKPQNDVLIVDASKHFVKEGKNNKLQASDIKRIVDAVINRDSIEKFSQVVSKQTLRDNGYNLNIPRYVDS SPAAESWDLHATMLGGIPNSEIAQLHQYWQAFPQLHDALFVAKSAAHSELAIAKRDVNATITQHSQVVEFVTAYNQAFDG TNANSSFDDYLNNTLIQGWQAVNRNQQEPELSTELFTRLSSVALIDKYQAYQYLNNQWQLISADLEMMQTEGFAATKQVD PNIVVKKVKGKDTEVQDGWKGHIMPFDLVQQTYLSDDLAALAKQENRLVEIGSLLEEILESLSEEDKEQDTVKESKDGFA NAEVAKAAKAFLKEQKDSKVKFEKESYEAKIIAANKLIDEEKALKKAVKEAQVALHLKTKTTIEGLTDQQVNELLHLKWI APLSQELAAMPSVVISELTNQVQSLADKYAVTYSQVANEIKTTEQELADMMGELTGNEFDMQGLNELTSLLKGA
Sequences:
>Translated_874_residues MNKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTKEGMTPEDIKALNEEDADTVKYIQDNLGYFIA YDNLFATWVDPAFDFDESNVRDALSAFSRLISPTYKKLFEGIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGKQ GYDVLGYIYEYLIEKFAANAGKKAGEFYTPHEVSVLMSHIIAHELKHKDTIEIYDPTSGSGSLLINIGEAVEKYAKSKDS ITYYAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEDDWPYFDENDPQGTYHALYVDAVVSNPPYSQAWDPSFKDSD PRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMTIVLPHGVLFRGGEEGEIRKQLIEQNHIDAIIGLPANIFFGTGIPTVI LVLKQKRGSIDKPQNDVLIVDASKHFVKEGKNNKLQASDIKRIVDAVINRDSIEKFSQVVSKQTLRDNGYNLNIPRYVDS SPAAESWDLHATMLGGIPNSEIAQLHQYWQAFPQLHDALFVAKSAAHSELAIAKRDVNATITQHSQVVEFVTAYNQAFDG TNANSSFDDYLNNTLIQGWQAVNRNQQEPELSTELFTRLSSVALIDKYQAYQYLNNQWQLISADLEMMQTEGFAATKQVD PNIVVKKVKGKDTEVQDGWKGHIMPFDLVQQTYLSDDLAALAKQENRLVEIGSLLEEILESLSEEDKEQDTVKESKDGFA NAEVAKAAKAFLKEQKDSKVKFEKESYEAKIIAANKLIDEEKALKKAVKEAQVALHLKTKTTIEGLTDQQVNELLHLKWI APLSQELAAMPSVVISELTNQVQSLADKYAVTYSQVANEIKTTEQELADMMGELTGNEFDMQGLNELTSLLKGA >Mature_874_residues MNKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTKEGMTPEDIKALNEEDADTVKYIQDNLGYFIA YDNLFATWVDPAFDFDESNVRDALSAFSRLISPTYKKLFEGIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGKQ GYDVLGYIYEYLIEKFAANAGKKAGEFYTPHEVSVLMSHIIAHELKHKDTIEIYDPTSGSGSLLINIGEAVEKYAKSKDS ITYYAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEDDWPYFDENDPQGTYHALYVDAVVSNPPYSQAWDPSFKDSD PRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMTIVLPHGVLFRGGEEGEIRKQLIEQNHIDAIIGLPANIFFGTGIPTVI LVLKQKRGSIDKPQNDVLIVDASKHFVKEGKNNKLQASDIKRIVDAVINRDSIEKFSQVVSKQTLRDNGYNLNIPRYVDS SPAAESWDLHATMLGGIPNSEIAQLHQYWQAFPQLHDALFVAKSAAHSELAIAKRDVNATITQHSQVVEFVTAYNQAFDG TNANSSFDDYLNNTLIQGWQAVNRNQQEPELSTELFTRLSSVALIDKYQAYQYLNNQWQLISADLEMMQTEGFAATKQVD PNIVVKKVKGKDTEVQDGWKGHIMPFDLVQQTYLSDDLAALAKQENRLVEIGSLLEEILESLSEEDKEQDTVKESKDGFA NAEVAKAAKAFLKEQKDSKVKFEKESYEAKIIAANKLIDEEKALKKAVKEAQVALHLKTKTTIEGLTDQQVNELLHLKWI APLSQELAAMPSVVISELTNQVQSLADKYAVTYSQVANEIKTTEQELADMMGELTGNEFDMQGLNELTSLLKGA
Specific function: Methylation of specific adenine residues; required for both restriction and modification activities [H]
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1790808, Length=323, Percent_Identity=26.625386996904, Blast_Score=100, Evalue=4e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 - InterPro: IPR004546 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 98254; Mature: 98254
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTKEGMTPEDIKAL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHC NEEDADTVKYIQDNLGYFIAYDNLFATWVDPAFDFDESNVRDALSAFSRLISPTYKKLFE CCCCHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHH GIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGKQGYDVLGYIYEYLIEKFAANA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC GKKAGEFYTPHEVSVLMSHIIAHELKHKDTIEIYDPTSGSGSLLINIGEAVEKYAKSKDS CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEHHHHHHHHHCCCCC ITYYAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEDDWPYFDENDPQGTYHALYVD HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE AVVSNPPYSQAWDPSFKDSDPRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMTIVLPHGV HHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCE LFRGGEEGEIRKQLIEQNHIDAIIGLPANIFFGTGIPTVILVLKQKRGSIDKPQNDVLIV EEECCCCCHHHHHHHHHCCCCEEECCCCHHEECCCHHHHHHHHHHHCCCCCCCCCCEEEE DASKHFVKEGKNNKLQASDIKRIVDAVINRDSIEKFSQVVSKQTLRDNGYNLNIPRYVDS ECCHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC SPAAESWDLHATMLGGIPNSEIAQLHQYWQAFPQLHDALFVAKSAAHSELAIAKRDVNAT CCCCCCCCCHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHH ITQHSQVVEFVTAYNQAFDGTNANSSFDDYLNNTLIQGWQAVNRNQQEPELSTELFTRLS HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH SVALIDKYQAYQYLNNQWQLISADLEMMQTEGFAATKQVDPNIVVKKVKGKDTEVQDGWK HHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCC GHIMPFDLVQQTYLSDDLAALAKQENRLVEIGSLLEEILESLSEEDKEQDTVKESKDGFA CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NAEVAKAAKAFLKEQKDSKVKFEKESYEAKIIAANKLIDEEKALKKAVKEAQVALHLKTK HHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHEEEECH TTIEGLTDQQVNELLHLKWIAPLSQELAAMPSVVISELTNQVQSLADKYAVTYSQVANEI HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KTTEQELADMMGELTGNEFDMQGLNELTSLLKGA HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MNKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTKEGMTPEDIKAL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHC NEEDADTVKYIQDNLGYFIAYDNLFATWVDPAFDFDESNVRDALSAFSRLISPTYKKLFE CCCCHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHH GIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGKQGYDVLGYIYEYLIEKFAANA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC GKKAGEFYTPHEVSVLMSHIIAHELKHKDTIEIYDPTSGSGSLLINIGEAVEKYAKSKDS CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEHHHHHHHHHCCCCC ITYYAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEDDWPYFDENDPQGTYHALYVD HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE AVVSNPPYSQAWDPSFKDSDPRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMTIVLPHGV HHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCE LFRGGEEGEIRKQLIEQNHIDAIIGLPANIFFGTGIPTVILVLKQKRGSIDKPQNDVLIV EEECCCCCHHHHHHHHHCCCCEEECCCCHHEECCCHHHHHHHHHHHCCCCCCCCCCEEEE DASKHFVKEGKNNKLQASDIKRIVDAVINRDSIEKFSQVVSKQTLRDNGYNLNIPRYVDS ECCHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC SPAAESWDLHATMLGGIPNSEIAQLHQYWQAFPQLHDALFVAKSAAHSELAIAKRDVNAT CCCCCCCCCHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHH ITQHSQVVEFVTAYNQAFDGTNANSSFDDYLNNTLIQGWQAVNRNQQEPELSTELFTRLS HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH SVALIDKYQAYQYLNNQWQLISADLEMMQTEGFAATKQVDPNIVVKKVKGKDTEVQDGWK HHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCC GHIMPFDLVQQTYLSDDLAALAKQENRLVEIGSLLEEILESLSEEDKEQDTVKESKDGFA CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NAEVAKAAKAFLKEQKDSKVKFEKESYEAKIIAANKLIDEEKALKKAVKEAQVALHLKTK HHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHEEEECH TTIEGLTDQQVNELLHLKWIAPLSQELAAMPSVVISELTNQVQSLADKYAVTYSQVANEI HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KTTEQELADMMGELTGNEFDMQGLNELTSLLKGA HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8948633 [H]