| Definition | Borrelia afzelii PKo plasmid lp60, complete sequence. |
|---|---|
| Accession | NC_008564 |
| Length | 59,958 |
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The map label for this gene is 117621606
Identifier: 117621606
GI number: 117621606
Start: 27289
End: 27897
Strand: Direct
Name: 117621606
Synonym: BAPKO_2035
Alternate gene names: NA
Gene position: 27289-27897 (Clockwise)
Preceding gene: 117621605
Following gene: 117621607
Centisome position: 45.51
GC content: 28.24
Gene sequence:
>609_bases ATGGGTGATAATAACAACGCAAAGAGTAATTTTCAAGATTTTAAATTTAATAATGTTGAATTTGCCAAAGAATTATCAAC GCAAGTTATCAAGGCTTCTTTAACAATAGAGGCCAATTTAAATAAAATTTTAAAGACAAAAAATTTGGATGATGCTTGCT TAAAGGCCGAAAACTCAAAATTAAAACTTATTTCTACGGTTAAGCTAGCTAAAAAACTAAACAACCATTTACTCTTAGAA TTTGATAAAATTCCTTTTGATTTTGATATTCCCATAACATTTAGCATTGTTGACAAGATTTTAAAAGTATTTTATTGGAC AATAGTCAATTTTGATTCTCATACTGTAAATGAAATTGAATTAATAGGGTTAAAAGAGCTGGAGTTTTTATATGAAGAGG AAGAAGGAATGAAATCTGCAGAAGAAGAGATTAGTAATATTAAAAATCTTAAAGAAAGAGAATTTCTTTCCGGGTTGCTT TTAGTTATGAAATTTACATTTCAAGCAGACAAAGCCTTAATAAAAGCAATCAAGGCGTCTCTTTTAGCAACGGCATTTAT TGCTCAACGGGGAATAGAAGGCAAGCAGATTTTATTTTTTTATATTTAA
Upstream 100 bases:
>100_bases AGGTATGTTTTTATAAAAGGCAGGTTCTAATGAGAACTTGTCTTTTTTGTGCTTTAAGAGACTTTTGAGGTGCTTTTGCA AGGTTGTATCTTTTTAGGTT
Downstream 100 bases:
>100_bases TGTATATTGGTTTGATTTTCAAATGTGTTTAAATATTAAAAGGTAGAGAACTGGCTCTCTACCTTTTTAATATTTATTGG GATTGGATAAAGTATTAATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 202; Mature: 201
Protein sequence:
>202_residues MGDNNNAKSNFQDFKFNNVEFAKELSTQVIKASLTIEANLNKILKTKNLDDACLKAENSKLKLISTVKLAKKLNNHLLLE FDKIPFDFDIPITFSIVDKILKVFYWTIVNFDSHTVNEIELIGLKELEFLYEEEEGMKSAEEEISNIKNLKEREFLSGLL LVMKFTFQADKALIKAIKASLLATAFIAQRGIEGKQILFFYI
Sequences:
>Translated_202_residues MGDNNNAKSNFQDFKFNNVEFAKELSTQVIKASLTIEANLNKILKTKNLDDACLKAENSKLKLISTVKLAKKLNNHLLLE FDKIPFDFDIPITFSIVDKILKVFYWTIVNFDSHTVNEIELIGLKELEFLYEEEEGMKSAEEEISNIKNLKEREFLSGLL LVMKFTFQADKALIKAIKASLLATAFIAQRGIEGKQILFFYI >Mature_201_residues GDNNNAKSNFQDFKFNNVEFAKELSTQVIKASLTIEANLNKILKTKNLDDACLKAENSKLKLISTVKLAKKLNNHLLLEF DKIPFDFDIPITFSIVDKILKVFYWTIVNFDSHTVNEIELIGLKELEFLYEEEEGMKSAEEEISNIKNLKEREFLSGLLL VMKFTFQADKALIKAIKASLLATAFIAQRGIEGKQILFFYI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23136; Mature: 23005
Theoretical pI: Translated: 5.90; Mature: 5.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGDNNNAKSNFQDFKFNNVEFAKELSTQVIKASLTIEANLNKILKTKNLDDACLKAENSK CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCHHHHHHCCCCCHHHHHCCCCC LKLISTVKLAKKLNNHLLLEFDKIPFDFDIPITFSIVDKILKVFYWTIVNFDSHTVNEIE CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEE LIGLKELEFLYEEEEGMKSAEEEISNIKNLKEREFLSGLLLVMKFTFQADKALIKAIKAS EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLATAFIAQRGIEGKQILFFYI HHHHHHHHHCCCCCCEEEEEEC >Mature Secondary Structure GDNNNAKSNFQDFKFNNVEFAKELSTQVIKASLTIEANLNKILKTKNLDDACLKAENSK CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCHHHHHHCCCCCHHHHHCCCCC LKLISTVKLAKKLNNHLLLEFDKIPFDFDIPITFSIVDKILKVFYWTIVNFDSHTVNEIE CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEE LIGLKELEFLYEEEEGMKSAEEEISNIKNLKEREFLSGLLLVMKFTFQADKALIKAIKAS EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLATAFIAQRGIEGKQILFFYI HHHHHHHHHCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA