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The map label for this gene is oppA-4 [H]

Identifier: 117621604

GI number: 117621604

Start: 24430

End: 26016

Strand: Reverse

Name: oppA-4 [H]

Synonym: BAPKO_2033

Alternate gene names: 117621604

Gene position: 26016-24430 (Counterclockwise)

Preceding gene: 117621626

Following gene: 117621597

Centisome position: 43.39

GC content: 30.69

Gene sequence:

>1587_bases
ATGAACAAAAAAAAAATCCCACTTTTAACGCTGTTAATTATATTTGTAAACTCGTGTACAATTTCTAAAACAAAAGATGA
TTTTATCTTTGGAGTTGGAATTGGAAACGAACCAACAACACTTGATCCGCAGTTTTGTAGTGATAAATTTGGCACTTTAA
TTATAAATGAACTATTTATTGGACTTTTAAGAGGAGATCCTAAAACAGGTGGATACAGACCAGGACTTGCAAAAAACTGG
GAAATTTCTCACGATAACACTTGCTATATATTCCATTTAAGAGACGACATTTATTGGAGTGATGGTGTTAAAATAACAGC
AGATACTATTAAAAGCTCATACATAATGGCCTTAGAAACTGAAGAGAGCCTGCCAAATATTAACCTATTAACATCAAAAA
TAAAAAATGCAAAAGAATTTTACGAAACAAAATTAAATCCAGATGAAGTTGGAATAAAAGTAATTAATGAGAAAACTTTA
GAAATAACTCTTTCTCAACCAACAACATATTTTCTTGATATACTTACAAACCCAATATTTATGCCTGTTCCTATCCATAT
TATTAAAAAGTTTGGAAATAAATGGACAAGCGCAGAAAACATGGTCACAAGCGGGCCTTTTAAACTAAAAAGAAGAATCT
TAAACGAAGAAATATCTCTTGAAAAGAATAAAAAATTTTATGATGCTGCAAACGTTGCTATTAGTGAGCTTACATTTGTT
ACTATAAACGACGCCCGCAGAATTTACAGCATGTATGAACACAACGAAATAGATGCTATTTTTAACAACATCCCCTTAAG
CCTTATTAATGAGCTTATCTTAAGAGAAGACTTTTATTCAACTGACATTAACCAAATTGGGTTTCTTTCATTAAACACAA
ATGTTAAACCTCTTAACAATCCAAAAGTAAGAGAAGCATTGTCTCTTGCGATTGACAGAGAAACATTGGTTTACAGAGTG
CTTGATAATAACTTTAAAGCAACAAGAAAAATGGTTCCTAATATTAATAATTATAATTATGGGAAAAAATTAAAACTATA
CAACCCACGAAAAGCAGAAAAACTTTTAGCCGAAGCTGGATATCCGGATGGAAAAAAATTTCCAACCCTTACAATAAAAT
ATAATAAAAATGACCTTAGAAAGGAAATTGCTAATTTTATTCAAAGCCAATGGAAAAAAGTTTTAAATATTGATATAGAA
ACTGAGCCTGAAACATGGAATAATTACGTATCAAACATTTTAAAAGGACAGTATGAGATCTCAATAAGGTCCTGGCAAGG
AGATTATTTAGATCCCATGGCATTCTTTAATATGTTTGAAACTGAAAACACTCATTTTTCATCTTACGGATATTCAAATC
CTGAGCTTAACGAACTGATAAGTAAATCTAAGTTTGAAGTGGATGAAAAAATCAGATTAGAATTGTTTAAAAAGGCTGAA
GAAATAATTATTGAAAATGATTACCCAGTAATTCCAATATACAGCGCTGCGGGAAACTATCTTTTTAGAAATGATAAATG
GACGGGGTGGAACACCAACAATTCAGAAAGATTTGCCCTATCAGAAATAAAACCTTTAGAAGATTAA

Upstream 100 bases:

>100_bases
ATTTAACAAAAATGTAAAATGTATTTTAAAAAAATATATTGCAATATAATTTGCTATAAAATAAATTAATTATTGACAAT
AAAGAGAGGAGCTTATAATT

Downstream 100 bases:

>100_bases
ATGATTTTTAAAAAATAGAGTCAAAAAAATGGCTCTATTTTTTTAAAGGTTTTTTAAAAATGAGCCTTTAAAAATTAATA
AATTAAAACTTATTTTTGCA

Product: oligopeptide ABC transporter, periplasmic

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
MNKKKIPLLTLLIIFVNSCTISKTKDDFIFGVGIGNEPTTLDPQFCSDKFGTLIINELFIGLLRGDPKTGGYRPGLAKNW
EISHDNTCYIFHLRDDIYWSDGVKITADTIKSSYIMALETEESLPNINLLTSKIKNAKEFYETKLNPDEVGIKVINEKTL
EITLSQPTTYFLDILTNPIFMPVPIHIIKKFGNKWTSAENMVTSGPFKLKRRILNEEISLEKNKKFYDAANVAISELTFV
TINDARRIYSMYEHNEIDAIFNNIPLSLINELILREDFYSTDINQIGFLSLNTNVKPLNNPKVREALSLAIDRETLVYRV
LDNNFKATRKMVPNINNYNYGKKLKLYNPRKAEKLLAEAGYPDGKKFPTLTIKYNKNDLRKEIANFIQSQWKKVLNIDIE
TEPETWNNYVSNILKGQYEISIRSWQGDYLDPMAFFNMFETENTHFSSYGYSNPELNELISKSKFEVDEKIRLELFKKAE
EIIIENDYPVIPIYSAAGNYLFRNDKWTGWNTNNSERFALSEIKPLED

Sequences:

>Translated_528_residues
MNKKKIPLLTLLIIFVNSCTISKTKDDFIFGVGIGNEPTTLDPQFCSDKFGTLIINELFIGLLRGDPKTGGYRPGLAKNW
EISHDNTCYIFHLRDDIYWSDGVKITADTIKSSYIMALETEESLPNINLLTSKIKNAKEFYETKLNPDEVGIKVINEKTL
EITLSQPTTYFLDILTNPIFMPVPIHIIKKFGNKWTSAENMVTSGPFKLKRRILNEEISLEKNKKFYDAANVAISELTFV
TINDARRIYSMYEHNEIDAIFNNIPLSLINELILREDFYSTDINQIGFLSLNTNVKPLNNPKVREALSLAIDRETLVYRV
LDNNFKATRKMVPNINNYNYGKKLKLYNPRKAEKLLAEAGYPDGKKFPTLTIKYNKNDLRKEIANFIQSQWKKVLNIDIE
TEPETWNNYVSNILKGQYEISIRSWQGDYLDPMAFFNMFETENTHFSSYGYSNPELNELISKSKFEVDEKIRLELFKKAE
EIIIENDYPVIPIYSAAGNYLFRNDKWTGWNTNNSERFALSEIKPLED
>Mature_528_residues
MNKKKIPLLTLLIIFVNSCTISKTKDDFIFGVGIGNEPTTLDPQFCSDKFGTLIINELFIGLLRGDPKTGGYRPGLAKNW
EISHDNTCYIFHLRDDIYWSDGVKITADTIKSSYIMALETEESLPNINLLTSKIKNAKEFYETKLNPDEVGIKVINEKTL
EITLSQPTTYFLDILTNPIFMPVPIHIIKKFGNKWTSAENMVTSGPFKLKRRILNEEISLEKNKKFYDAANVAISELTFV
TINDARRIYSMYEHNEIDAIFNNIPLSLINELILREDFYSTDINQIGFLSLNTNVKPLNNPKVREALSLAIDRETLVYRV
LDNNFKATRKMVPNINNYNYGKKLKLYNPRKAEKLLAEAGYPDGKKFPTLTIKYNKNDLRKEIANFIQSQWKKVLNIDIE
TEPETWNNYVSNILKGQYEISIRSWQGDYLDPMAFFNMFETENTHFSSYGYSNPELNELISKSKFEVDEKIRLELFKKAE
EIIIENDYPVIPIYSAAGNYLFRNDKWTGWNTNNSERFALSEIKPLED

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789397, Length=471, Percent_Identity=30.1486199575372, Blast_Score=222, Evalue=4e-59,
Organism=Escherichia coli, GI1787495, Length=474, Percent_Identity=30.379746835443, Blast_Score=221, Evalue=9e-59,
Organism=Escherichia coli, GI87081878, Length=520, Percent_Identity=27.8846153846154, Blast_Score=196, Evalue=3e-51,
Organism=Escherichia coli, GI1787052, Length=507, Percent_Identity=24.4575936883629, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI1789966, Length=447, Percent_Identity=24.6085011185682, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI1787762, Length=512, Percent_Identity=25.1953125, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1789887, Length=438, Percent_Identity=26.027397260274, Blast_Score=96, Evalue=8e-21,
Organism=Escherichia coli, GI1787551, Length=474, Percent_Identity=21.5189873417722, Blast_Score=89, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 61078; Mature: 61078

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKKIPLLTLLIIFVNSCTISKTKDDFIFGVGIGNEPTTLDPQFCSDKFGTLIINELFI
CCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCHHHHHHHHHHHH
GLLRGDPKTGGYRPGLAKNWEISHDNTCYIFHLRDDIYWSDGVKITADTIKSSYIMALET
HHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEECCCCEEEEECCCCEEEEEEEC
EESLPNINLLTSKIKNAKEFYETKLNPDEVGIKVINEKTLEITLSQPTTYFLDILTNPIF
CCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEECCEEEEEEECCCCHHHHHHHCCCCE
MPVPIHIIKKFGNKWTSAENMVTSGPFKLKRRILNEEISLEKNKKFYDAANVAISELTFV
ECCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHEEEEEEEEE
TINDARRIYSMYEHNEIDAIFNNIPLSLINELILREDFYSTDINQIGFLSLNTNVKPLNN
EECCHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCC
PKVREALSLAIDRETLVYRVLDNNFKATRKMVPNINNYNYGKKLKLYNPRKAEKLLAEAG
HHHHHHHHHHCCCHHEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHCC
YPDGKKFPTLTIKYNKNDLRKEIANFIQSQWKKVLNIDIETEPETWNNYVSNILKGQYEI
CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHCCEEEE
SIRSWQGDYLDPMAFFNMFETENTHFSSYGYSNPELNELISKSKFEVDEKIRLELFKKAE
EEEECCCCCCCHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
EIIIENDYPVIPIYSAAGNYLFRNDKWTGWNTNNSERFALSEIKPLED
HEEEECCCCEEEEECCCCCEEEECCEECCCCCCCCCEEEHHCCCCCCC
>Mature Secondary Structure
MNKKKIPLLTLLIIFVNSCTISKTKDDFIFGVGIGNEPTTLDPQFCSDKFGTLIINELFI
CCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCHHHHHHHHHHHH
GLLRGDPKTGGYRPGLAKNWEISHDNTCYIFHLRDDIYWSDGVKITADTIKSSYIMALET
HHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEECCCCEEEEECCCCEEEEEEEC
EESLPNINLLTSKIKNAKEFYETKLNPDEVGIKVINEKTLEITLSQPTTYFLDILTNPIF
CCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEECCEEEEEEECCCCHHHHHHHCCCCE
MPVPIHIIKKFGNKWTSAENMVTSGPFKLKRRILNEEISLEKNKKFYDAANVAISELTFV
ECCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHEEEEEEEEE
TINDARRIYSMYEHNEIDAIFNNIPLSLINELILREDFYSTDINQIGFLSLNTNVKPLNN
EECCHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCC
PKVREALSLAIDRETLVYRVLDNNFKATRKMVPNINNYNYGKKLKLYNPRKAEKLLAEAG
HHHHHHHHHHCCCHHEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHCC
YPDGKKFPTLTIKYNKNDLRKEIANFIQSQWKKVLNIDIETEPETWNNYVSNILKGQYEI
CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHCCEEEE
SIRSWQGDYLDPMAFFNMFETENTHFSSYGYSNPELNELISKSKFEVDEKIRLELFKKAE
EEEECCCCCCCHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
EIIIENDYPVIPIYSAAGNYLFRNDKWTGWNTNNSERFALSEIKPLED
HEEEECCCCEEEEECCCCCEEEECCEECCCCCCCCCEEEHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2821267; 3525163; 11677609; 8202710; 8747465; 10422831; 10438628 [H]