| Definition | Borrelia afzelii PKo plasmid lp60, complete sequence. |
|---|---|
| Accession | NC_008564 |
| Length | 59,958 |
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The map label for this gene is 117621576
Identifier: 117621576
GI number: 117621576
Start: 4545
End: 5387
Strand: Reverse
Name: 117621576
Synonym: BAPKO_2005
Alternate gene names: NA
Gene position: 5387-4545 (Counterclockwise)
Preceding gene: 117621577
Following gene: 117621571
Centisome position: 8.98
GC content: 31.2
Gene sequence:
>843_bases TTGAAAATAGTCATTATATTCGTCGTGGTTTTAATTCTTGGTTGTTCTTTAGATAATAATTCAAAAATGGAGAATGAGGG TGGCGGTTTTAAAGAAAATGGATCAGATAGACCAGGTCAAGAAAAAAGGGCTTTAGGTTCATCGAATTTTAGGTCATTGT TAGATGATTCTGGGGTGGGATCCAATTTTCAAAATTATGAGCCTTTAAAAGCGCTTGAGAATAAAAATAAATTTATTAAT TACAACCAAATAGAGTTTTTAGAAGGAACAAAATCAGTCAATTTGTATCTTTGGTCGACTTATATTCGCTGGGTGAAAAT TAAAGCCAGAGATTTGTGTGATGAGCGTGGAAATTGTATTAAAGAGCTTAATGGCATTAAGTATTCTTATCTTGTTTCTC CTATTGATGGAAGCTACATTTCTTATGCTATGCCTTTAATAATTTTTGAAACTACTAGTGAAAGTGATCCTTTTTATTCT GTTTCTGGATTTAAATTAATAAACAAAGGAAGCGATATAAATTTTAATGACAATAAGGGGGGATTTTTAGGGGGAATCCC AATGTCTGAAAAATCAGTTGAATCTGGGCTTGTAACTGCGTATCCTTTTGGTTCTAGTGATTCTAAAAGAGTGGTTGAGG CTTTTACTGCCCTTTATAATAATGGAATTTGGAACGATATGATTGCCGAGATTACCATTAAGTCTAAGAACCCTCCACAA AATGAAAAAGTTTACAGAATTTCACTTGATTCTAAGCTTTTTAATGTTACTATGAAAAAAATAATTGAAAAATATCCTAA TATAAAAAATACAAGCTTAACATTTAATTCGTTGATTAACTAG
Upstream 100 bases:
>100_bases ATTTTTGATTTTGCTTTTTTTGTTAATTGCTCTACATTTGCTTCTAATAATATAATTTAAGAATTTTAAATATTATAAAA AAGTTTTAAGGGGGAGCGTT
Downstream 100 bases:
>100_bases AAAGTTGTTTTAAGAGCTAGCAGTTTTAACTGCTAGCTTTTTTTAAAGTAATTTCAAATTTTAGGCTTAGTTTAGCATTA TACAGCGTCTTTAAGATTAT
Product: antigen, S2
Products: NA
Alternate protein names: Lipoprotein; P23-Like Cell Envelope Protein; S2 Lipoprotein
Number of amino acids: Translated: 280; Mature: 280
Protein sequence:
>280_residues MKIVIIFVVVLILGCSLDNNSKMENEGGGFKENGSDRPGQEKRALGSSNFRSLLDDSGVGSNFQNYEPLKALENKNKFIN YNQIEFLEGTKSVNLYLWSTYIRWVKIKARDLCDERGNCIKELNGIKYSYLVSPIDGSYISYAMPLIIFETTSESDPFYS VSGFKLINKGSDINFNDNKGGFLGGIPMSEKSVESGLVTAYPFGSSDSKRVVEAFTALYNNGIWNDMIAEITIKSKNPPQ NEKVYRISLDSKLFNVTMKKIIEKYPNIKNTSLTFNSLIN
Sequences:
>Translated_280_residues MKIVIIFVVVLILGCSLDNNSKMENEGGGFKENGSDRPGQEKRALGSSNFRSLLDDSGVGSNFQNYEPLKALENKNKFIN YNQIEFLEGTKSVNLYLWSTYIRWVKIKARDLCDERGNCIKELNGIKYSYLVSPIDGSYISYAMPLIIFETTSESDPFYS VSGFKLINKGSDINFNDNKGGFLGGIPMSEKSVESGLVTAYPFGSSDSKRVVEAFTALYNNGIWNDMIAEITIKSKNPPQ NEKVYRISLDSKLFNVTMKKIIEKYPNIKNTSLTFNSLIN >Mature_280_residues MKIVIIFVVVLILGCSLDNNSKMENEGGGFKENGSDRPGQEKRALGSSNFRSLLDDSGVGSNFQNYEPLKALENKNKFIN YNQIEFLEGTKSVNLYLWSTYIRWVKIKARDLCDERGNCIKELNGIKYSYLVSPIDGSYISYAMPLIIFETTSESDPFYS VSGFKLINKGSDINFNDNKGGFLGGIPMSEKSVESGLVTAYPFGSSDSKRVVEAFTALYNNGIWNDMIAEITIKSKNPPQ NEKVYRISLDSKLFNVTMKKIIEKYPNIKNTSLTFNSLIN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31434; Mature: 31434
Theoretical pI: Translated: 8.38; Mature: 8.38
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIVIIFVVVLILGCSLDNNSKMENEGGGFKENGSDRPGQEKRALGSSNFRSLLDDSGVG CEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHCCCCCC SNFQNYEPLKALENKNKFINYNQIEFLEGTKSVNLYLWSTYIRWVKIKARDLCDERGNCI CCCCCCCHHHHHHCCCCEECCCEEEEECCCCEEEEEEEEEEEEEEEEHHHHHHHHHCHHH KELNGIKYSYLVSPIDGSYISYAMPLIIFETTSESDPFYSVSGFKLINKGSDINFNDNKG HHHCCCEEEEEECCCCCCHHHEEEEEEEEEECCCCCCEEEECCEEEEECCCCCCCCCCCC GFLGGIPMSEKSVESGLVTAYPFGSSDSKRVVEAFTALYNNGIWNDMIAEITIKSKNPPQ CEEECCCCCHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCC NEKVYRISLDSKLFNVTMKKIIEKYPNIKNTSLTFNSLIN CCEEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEHHHHCC >Mature Secondary Structure MKIVIIFVVVLILGCSLDNNSKMENEGGGFKENGSDRPGQEKRALGSSNFRSLLDDSGVG CEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHCCCCCC SNFQNYEPLKALENKNKFINYNQIEFLEGTKSVNLYLWSTYIRWVKIKARDLCDERGNCI CCCCCCCHHHHHHCCCCEECCCEEEEECCCCEEEEEEEEEEEEEEEEHHHHHHHHHCHHH KELNGIKYSYLVSPIDGSYISYAMPLIIFETTSESDPFYSVSGFKLINKGSDINFNDNKG HHHCCCEEEEEECCCCCCHHHEEEEEEEEEECCCCCCEEEECCEEEEECCCCCCCCCCCC GFLGGIPMSEKSVESGLVTAYPFGSSDSKRVVEAFTALYNNGIWNDMIAEITIKSKNPPQ CEEECCCCCHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCC NEKVYRISLDSKLFNVTMKKIIEKYPNIKNTSLTFNSLIN CCEEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA