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The map label for this gene is ydiF [H]

Identifier: 116873510

GI number: 116873510

Start: 2125491

End: 2127443

Strand: Direct

Name: ydiF [H]

Synonym: lwe2094

Alternate gene names: 116873510

Gene position: 2125491-2127443 (Clockwise)

Preceding gene: 116873508

Following gene: 116873511

Centisome position: 75.53

GC content: 37.28

Gene sequence:

>1953_bases
ATGATATTATTACAAGTTCAGCAAATTTCTAAATTCTTCGGTGCAGAAGTTATTTTAGATAATATTAAATTAGAAGTAAA
AACAGGCGACCGAATTGCTTTAGTAGGCCGAAATGGCGCCGGGAAATCTACTTTGCTTAAAATTATTGCTGGGAAAATGA
GCTATGATGGCGGCACTATTTCCAAACCTAAAAGCGTTGAAATTGGCTATTTGGCTCAAAATACCGGTCTCGAATCAACA
AAAACAATTTGGGATGAAATGCTTAGCGTGTTTGATTCCCTTAGAAAAATGGAAGCTGATTTACGCAAAATGGAGCTTCG
TCTTGGTGAACCGGAACTATATAATGATCCGGAAAAATATCAAGCTTTGATGACAGATTATGATACGTTACAACATACAT
TTAAAGAAATTGGTGGCTATACGTATGAAGCAGAAATTCGCTCCGTTTTAAATGGATTGCGGTTTTATGCAGATGATTAT
GAAGTCGAAATCGCTTCTTTAAGTGGTGGGCAAAAAACAAGACTTGCACTAGCTAAATTATTACTCGCCAAGCAAGATAT
TCTTGTGCTCGATGAACCTACAAACCATTTAGATATTGAAACATTAGCATGGCTAGAAACTTACTTGCAAAATTACCACG
GTTCCCTACTTATTGTTTCCCATGACCGTTATTTCTTAGATAAAGTCGTTAATCAAGTATACGAAATTAGCCGTACAAAA
ATTGACCACTACAAAGGAAATTACAGTTCATTTGTTAGTCAAAAACAAGCCAAACTAGAACAAATGTGGAAAGAATTCGA
CAAACAACAAAAACAAATTGCAAAACTAGAAGATTTTGTCGCTAGAAATATAGTTCGCGCTTCTACAACTAAACGAGCTC
AAAGCAGAAGAAAACAATTGGAAAAAATGGATGTCCTCGGCCGACCACAAGGCGATGAAAAATCCGCCCATTTTGGCTTC
CAATTTGAAAAGCAAACAGGTAAAGACGTTTTAATGGTAGATCAGCTAAGTATTGGTTACGCAAAAGATAAACGAATTGC
TTCCAATCTAACATTCGAAATGAAACGCCAAGATAGCCTTGCTCTCGTTGGTCCGAACGGAATCGGTAAATCAACTTTAC
TTAAAACACTCATTCGCGACATTCCAGCTTTAAGTGGCGAATTCCACTTCGGTGCCGGCGTGAAAATTGGCTACTACGAT
CAAGAACAAGCCAAACTAACATCCAACAAAACCGTTTTAATGGAACTGTGGGATGATTATCCAGAATTAAATGAAGTAAA
CGTCCGAACCACACTTGGTAATTTTTTATTTTCAGATGATGATGTGCTAAAAAATGTTCAATCGCTTAGTGGTGGCGAAA
AAGCAAGACTCGCTCTTGCCAAGCTCACTTTACTTGAAGCGAATGTGCTTATTCTTGATGAACCTACGAACCATTTAGAT
ATTGAAAGTAAAGAAGTTTTAGAAGCCGCTTTAATCGATTTTGAAGGGACGATTCTCTTCGTTTCTCATGACCGTTACTT
TATTAATCGAATTGCCTCAAAAGTCGTCGAACTAGCTCCGGAGAAAGCTACTGTTTTCCTAGGAGATTACGATTATTATC
AAGAAAAGCTAGCAGAAGCTAAAGAACTAGCGCGCCTAGATGCTGAGGATCGACGTAAAAAAGGAGAACAAGTAGAAGCA
ACTGCCTCTTTTAGAAAGCTAAACTACCAAGAAGAAAAAGAACAACAAAAACTACTTCGTCAAAGAAAACGAAAACTAGA
AGAAATAGAAAAATCCATGGAAGAAACAGATGAAAAAATCGCCGAACTAGAACTCCAGTTAACCAAACCTGAAATTTTCC
AAAATCACGAGAAAGCATTAGAAATCACGCAAGAACTTGACGTGATAAAAGCGAATGGAGAAAGTCTCATGGAAGAATGG
GAAACAGTAAGTGAAGAACTAGAATCGATGTAA

Upstream 100 bases:

>100_bases
ATTTTCACAATCATAATTATTCATGCGAACTTGGCTATCACATTGCGATTACTTGGATTTTAAGATAAACTAGTAAGGAG
AACAATCGAGGAGAGAGATT

Downstream 100 bases:

>100_bases
TCTGCATAAAAAAAGGAGCACATAATGAAAAAGATTTTAATTATTTCTGGTTCGATTATCATTGGCTTATTATTAATTAT
TACTATTTGCGCAAGTTTTT

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 650; Mature: 650

Protein sequence:

>650_residues
MILLQVQQISKFFGAEVILDNIKLEVKTGDRIALVGRNGAGKSTLLKIIAGKMSYDGGTISKPKSVEIGYLAQNTGLEST
KTIWDEMLSVFDSLRKMEADLRKMELRLGEPELYNDPEKYQALMTDYDTLQHTFKEIGGYTYEAEIRSVLNGLRFYADDY
EVEIASLSGGQKTRLALAKLLLAKQDILVLDEPTNHLDIETLAWLETYLQNYHGSLLIVSHDRYFLDKVVNQVYEISRTK
IDHYKGNYSSFVSQKQAKLEQMWKEFDKQQKQIAKLEDFVARNIVRASTTKRAQSRRKQLEKMDVLGRPQGDEKSAHFGF
QFEKQTGKDVLMVDQLSIGYAKDKRIASNLTFEMKRQDSLALVGPNGIGKSTLLKTLIRDIPALSGEFHFGAGVKIGYYD
QEQAKLTSNKTVLMELWDDYPELNEVNVRTTLGNFLFSDDDVLKNVQSLSGGEKARLALAKLTLLEANVLILDEPTNHLD
IESKEVLEAALIDFEGTILFVSHDRYFINRIASKVVELAPEKATVFLGDYDYYQEKLAEAKELARLDAEDRRKKGEQVEA
TASFRKLNYQEEKEQQKLLRQRKRKLEEIEKSMEETDEKIAELELQLTKPEIFQNHEKALEITQELDVIKANGESLMEEW
ETVSEELESM

Sequences:

>Translated_650_residues
MILLQVQQISKFFGAEVILDNIKLEVKTGDRIALVGRNGAGKSTLLKIIAGKMSYDGGTISKPKSVEIGYLAQNTGLEST
KTIWDEMLSVFDSLRKMEADLRKMELRLGEPELYNDPEKYQALMTDYDTLQHTFKEIGGYTYEAEIRSVLNGLRFYADDY
EVEIASLSGGQKTRLALAKLLLAKQDILVLDEPTNHLDIETLAWLETYLQNYHGSLLIVSHDRYFLDKVVNQVYEISRTK
IDHYKGNYSSFVSQKQAKLEQMWKEFDKQQKQIAKLEDFVARNIVRASTTKRAQSRRKQLEKMDVLGRPQGDEKSAHFGF
QFEKQTGKDVLMVDQLSIGYAKDKRIASNLTFEMKRQDSLALVGPNGIGKSTLLKTLIRDIPALSGEFHFGAGVKIGYYD
QEQAKLTSNKTVLMELWDDYPELNEVNVRTTLGNFLFSDDDVLKNVQSLSGGEKARLALAKLTLLEANVLILDEPTNHLD
IESKEVLEAALIDFEGTILFVSHDRYFINRIASKVVELAPEKATVFLGDYDYYQEKLAEAKELARLDAEDRRKKGEQVEA
TASFRKLNYQEEKEQQKLLRQRKRKLEEIEKSMEETDEKIAELELQLTKPEIFQNHEKALEITQELDVIKANGESLMEEW
ETVSEELESM
>Mature_650_residues
MILLQVQQISKFFGAEVILDNIKLEVKTGDRIALVGRNGAGKSTLLKIIAGKMSYDGGTISKPKSVEIGYLAQNTGLEST
KTIWDEMLSVFDSLRKMEADLRKMELRLGEPELYNDPEKYQALMTDYDTLQHTFKEIGGYTYEAEIRSVLNGLRFYADDY
EVEIASLSGGQKTRLALAKLLLAKQDILVLDEPTNHLDIETLAWLETYLQNYHGSLLIVSHDRYFLDKVVNQVYEISRTK
IDHYKGNYSSFVSQKQAKLEQMWKEFDKQQKQIAKLEDFVARNIVRASTTKRAQSRRKQLEKMDVLGRPQGDEKSAHFGF
QFEKQTGKDVLMVDQLSIGYAKDKRIASNLTFEMKRQDSLALVGPNGIGKSTLLKTLIRDIPALSGEFHFGAGVKIGYYD
QEQAKLTSNKTVLMELWDDYPELNEVNVRTTLGNFLFSDDDVLKNVQSLSGGEKARLALAKLTLLEANVLILDEPTNHLD
IESKEVLEAALIDFEGTILFVSHDRYFINRIASKVVELAPEKATVFLGDYDYYQEKLAEAKELARLDAEDRRKKGEQVEA
TASFRKLNYQEEKEQQKLLRQRKRKLEEIEKSMEETDEKIAELELQLTKPEIFQNHEKALEITQELDVIKANGESLMEEW
ETVSEELESM

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=539, Percent_Identity=32.0964749536178, Blast_Score=265, Evalue=1e-70,
Organism=Homo sapiens, GI10947137, Length=540, Percent_Identity=33.1481481481482, Blast_Score=242, Evalue=1e-63,
Organism=Homo sapiens, GI27881506, Length=540, Percent_Identity=33.1481481481482, Blast_Score=242, Evalue=1e-63,
Organism=Homo sapiens, GI10947135, Length=544, Percent_Identity=31.4338235294118, Blast_Score=221, Evalue=2e-57,
Organism=Homo sapiens, GI69354671, Length=544, Percent_Identity=31.4338235294118, Blast_Score=221, Evalue=2e-57,
Organism=Escherichia coli, GI1789751, Length=655, Percent_Identity=32.5190839694656, Blast_Score=343, Evalue=1e-95,
Organism=Escherichia coli, GI1787041, Length=537, Percent_Identity=33.5195530726257, Blast_Score=304, Evalue=9e-84,
Organism=Escherichia coli, GI2367384, Length=525, Percent_Identity=34.6666666666667, Blast_Score=282, Evalue=6e-77,
Organism=Escherichia coli, GI1787182, Length=652, Percent_Identity=30.6748466257669, Blast_Score=257, Evalue=1e-69,
Organism=Escherichia coli, GI1788165, Length=260, Percent_Identity=25, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1786698, Length=203, Percent_Identity=30.0492610837438, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI48995001, Length=255, Percent_Identity=27.4509803921569, Blast_Score=69, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17553372, Length=540, Percent_Identity=32.4074074074074, Blast_Score=248, Evalue=6e-66,
Organism=Caenorhabditis elegans, GI17555318, Length=532, Percent_Identity=32.1428571428571, Blast_Score=240, Evalue=2e-63,
Organism=Caenorhabditis elegans, GI17559834, Length=547, Percent_Identity=30.164533820841, Blast_Score=240, Evalue=2e-63,
Organism=Saccharomyces cerevisiae, GI6321121, Length=537, Percent_Identity=31.8435754189944, Blast_Score=243, Evalue=1e-64,
Organism=Saccharomyces cerevisiae, GI6320874, Length=545, Percent_Identity=31.1926605504587, Blast_Score=239, Evalue=1e-63,
Organism=Saccharomyces cerevisiae, GI6324314, Length=394, Percent_Identity=28.1725888324873, Blast_Score=134, Evalue=4e-32,
Organism=Saccharomyces cerevisiae, GI6325030, Length=392, Percent_Identity=29.0816326530612, Blast_Score=122, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6323278, Length=394, Percent_Identity=25.8883248730964, Blast_Score=120, Evalue=5e-28,
Organism=Saccharomyces cerevisiae, GI6323217, Length=213, Percent_Identity=30.9859154929577, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24666836, Length=540, Percent_Identity=32.2222222222222, Blast_Score=268, Evalue=7e-72,
Organism=Drosophila melanogaster, GI24641342, Length=533, Percent_Identity=32.6454033771107, Blast_Score=255, Evalue=7e-68,
Organism=Drosophila melanogaster, GI24642252, Length=541, Percent_Identity=30.6839186691312, Blast_Score=246, Evalue=4e-65,
Organism=Drosophila melanogaster, GI18859989, Length=541, Percent_Identity=30.6839186691312, Blast_Score=246, Evalue=4e-65,
Organism=Drosophila melanogaster, GI281363262, Length=220, Percent_Identity=27.7272727272727, Blast_Score=69, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24653245, Length=220, Percent_Identity=27.7272727272727, Blast_Score=69, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 74332; Mature: 74332

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS00867 CPSASE_2 ; PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILLQVQQISKFFGAEVILDNIKLEVKTGDRIALVGRNGAGKSTLLKIIAGKMSYDGGTI
CEEEEHHHHHHHHCHHEEEECEEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCC
SKPKSVEIGYLAQNTGLESTKTIWDEMLSVFDSLRKMEADLRKMELRLGEPELYNDPEKY
CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
QALMTDYDTLQHTFKEIGGYTYEAEIRSVLNGLRFYADDYEVEIASLSGGQKTRLALAKL
HHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
LLAKQDILVLDEPTNHLDIETLAWLETYLQNYHGSLLIVSHDRYFLDKVVNQVYEISRTK
HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHH
IDHYKGNYSSFVSQKQAKLEQMWKEFDKQQKQIAKLEDFVARNIVRASTTKRAQSRRKQL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKMDVLGRPQGDEKSAHFGFQFEKQTGKDVLMVDQLSIGYAKDKRIASNLTFEMKRQDSL
HHHHHCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCHHHHHCCEEEEECCCCE
ALVGPNGIGKSTLLKTLIRDIPALSGEFHFGAGVKIGYYDQEQAKLTSNKTVLMELWDDY
EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCHHHHHCCCCEEEEEHHCCC
PELNEVNVRTTLGNFLFSDDDVLKNVQSLSGGEKARLALAKLTLLEANVLILDEPTNHLD
CCCCCEEEHEEHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHEECCEEEEECCCCCCC
IESKEVLEAALIDFEGTILFVSHDRYFINRIASKVVELAPEKATVFLGDYDYYQEKLAEA
CCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
KELARLDAEDRRKKGEQVEATASFRKLNYQEEKEQQKLLRQRKRKLEEIEKSMEETDEKI
HHHHHCCCHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AELELQLTKPEIFQNHEKALEITQELDVIKANGESLMEEWETVSEELESM
HHHHEEECCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MILLQVQQISKFFGAEVILDNIKLEVKTGDRIALVGRNGAGKSTLLKIIAGKMSYDGGTI
CEEEEHHHHHHHHCHHEEEECEEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCC
SKPKSVEIGYLAQNTGLESTKTIWDEMLSVFDSLRKMEADLRKMELRLGEPELYNDPEKY
CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
QALMTDYDTLQHTFKEIGGYTYEAEIRSVLNGLRFYADDYEVEIASLSGGQKTRLALAKL
HHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
LLAKQDILVLDEPTNHLDIETLAWLETYLQNYHGSLLIVSHDRYFLDKVVNQVYEISRTK
HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHH
IDHYKGNYSSFVSQKQAKLEQMWKEFDKQQKQIAKLEDFVARNIVRASTTKRAQSRRKQL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKMDVLGRPQGDEKSAHFGFQFEKQTGKDVLMVDQLSIGYAKDKRIASNLTFEMKRQDSL
HHHHHCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCHHHHHCCEEEEECCCCE
ALVGPNGIGKSTLLKTLIRDIPALSGEFHFGAGVKIGYYDQEQAKLTSNKTVLMELWDDY
EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCHHHHHCCCCEEEEEHHCCC
PELNEVNVRTTLGNFLFSDDDVLKNVQSLSGGEKARLALAKLTLLEANVLILDEPTNHLD
CCCCCEEEHEEHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHEECCEEEEECCCCCCC
IESKEVLEAALIDFEGTILFVSHDRYFINRIASKVVELAPEKATVFLGDYDYYQEKLAEA
CCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
KELARLDAEDRRKKGEQVEATASFRKLNYQEEKEQQKLLRQRKRKLEEIEKSMEETDEKI
HHHHHCCCHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AELELQLTKPEIFQNHEKALEITQELDVIKANGESLMEEWETVSEELESM
HHHHEEECCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]