| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
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The map label for this gene is yfhP [H]
Identifier: 116873124
GI number: 116873124
Start: 1731699
End: 1732679
Strand: Direct
Name: yfhP [H]
Synonym: lwe1708
Alternate gene names: 116873124
Gene position: 1731699-1732679 (Clockwise)
Preceding gene: 116873120
Following gene: 116873128
Centisome position: 61.54
GC content: 37.41
Gene sequence:
>981_bases TTGGATACTGGCACACATGTAGTAATGGGAATTGCACTCGGAGCATTAGCAACCGTAGACCCGGTAGTTGCCGGAAGTTC TCAAGCTGCCATTGGTATTATGACAGCAACAATTATTGGCTCTCAAATTCCAGACATTGACACTGTATTAAAACTTAAAA ACAACGCTGATTATATTAGAAATCATCGTGGAATCACGCATTCCTTGCCGATGCTTGCCATTTGGCCATTACTTATTTCA TCTATTCTGTATTTCATTTTTCCAGCAGCCACGTTTATCCATTTATTATTATGGACATTTATCGCGGTTGGGCTACACAT TTTTGTAGATATTTTTAACGCATACGGGACACAAGCTGTTAGGCCGTTTAAGGAAACATGGGTCGCATTTGGGTTTATCA ATACCTTTGATTGGTTTATTTTTGGTTCCCATGTTGTTGCAATTGCGGCTTGGCTACTAGGATCCCCTGTACTCGCAACG TTTGTAACGCTTTACGTTATTTTGGCACTTTATTATGTGGCAAGATTTGTCACACAACGAATGATTAAGCATGCGGTTCA AAATCTAATTCCAGATTCAGAAGAAATCATTATCGCTTCTACAATTCACTTCTTTCAGTGGCGCGTGGCAGTAACAACTA AAGATCATTACTATGTAGGCCGAGCTTTTAAACGAAACATCTCTATCTACGAAAAATTTGATCGTTTACCAGTTCCAGAT AATGAAATCATCCGTTCTGCGAAAAAAGATAAAAACCTTGCAGCTTTCATCTCATTCTCCAAAGTATACAATTGGCGAAT CGAGGAAAAACTAGATGGTACTTATGTTACTTTTACCGATTTGCGTTATCGAAGTAATGGGCACTATCCTTTTGTAGCAG TAGTTAAATTAGACGATGATTTAAAGATTATTTCATCTTATACTGGTTGGATTTTCTCAACAGAAAAATTACACAAAAAA TTAGCACCAGTTAGTATTTAA
Upstream 100 bases:
>100_bases TTCTATTATACAGAATGCTGGCTTGATTGGATAGTGTTGTGCTTTCTTAGGCAATACTGCTTGTATTATTAAAGACCGAT TTTAGAGGAGGCAAAGTCAC
Downstream 100 bases:
>100_bases AGAAGACCCGGAATTTTCCGGGTCTTCTTTGTTTATCTACCTGTACTGCCAATTCCACCAACACGTGATTCATTTGCAAG AATATCTGTATCTGCTACTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 326; Mature: 326
Protein sequence:
>326_residues MDTGTHVVMGIALGALATVDPVVAGSSQAAIGIMTATIIGSQIPDIDTVLKLKNNADYIRNHRGITHSLPMLAIWPLLIS SILYFIFPAATFIHLLLWTFIAVGLHIFVDIFNAYGTQAVRPFKETWVAFGFINTFDWFIFGSHVVAIAAWLLGSPVLAT FVTLYVILALYYVARFVTQRMIKHAVQNLIPDSEEIIIASTIHFFQWRVAVTTKDHYYVGRAFKRNISIYEKFDRLPVPD NEIIRSAKKDKNLAAFISFSKVYNWRIEEKLDGTYVTFTDLRYRSNGHYPFVAVVKLDDDLKIISSYTGWIFSTEKLHKK LAPVSI
Sequences:
>Translated_326_residues MDTGTHVVMGIALGALATVDPVVAGSSQAAIGIMTATIIGSQIPDIDTVLKLKNNADYIRNHRGITHSLPMLAIWPLLIS SILYFIFPAATFIHLLLWTFIAVGLHIFVDIFNAYGTQAVRPFKETWVAFGFINTFDWFIFGSHVVAIAAWLLGSPVLAT FVTLYVILALYYVARFVTQRMIKHAVQNLIPDSEEIIIASTIHFFQWRVAVTTKDHYYVGRAFKRNISIYEKFDRLPVPD NEIIRSAKKDKNLAAFISFSKVYNWRIEEKLDGTYVTFTDLRYRSNGHYPFVAVVKLDDDLKIISSYTGWIFSTEKLHKK LAPVSI >Mature_326_residues MDTGTHVVMGIALGALATVDPVVAGSSQAAIGIMTATIIGSQIPDIDTVLKLKNNADYIRNHRGITHSLPMLAIWPLLIS SILYFIFPAATFIHLLLWTFIAVGLHIFVDIFNAYGTQAVRPFKETWVAFGFINTFDWFIFGSHVVAIAAWLLGSPVLAT FVTLYVILALYYVARFVTQRMIKHAVQNLIPDSEEIIIASTIHFFQWRVAVTTKDHYYVGRAFKRNISIYEKFDRLPVPD NEIIRSAKKDKNLAAFISFSKVYNWRIEEKLDGTYVTFTDLRYRSNGHYPFVAVVKLDDDLKIISSYTGWIFSTEKLHKK LAPVSI
Specific function: May act as a negative regulator for the transcription of yfhQ, fabL, sspE and yfhP [H]
COG id: COG1988
COG function: function code R; Predicted membrane-bound metal-dependent hydrolases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007404 [H]
Pfam domain/function: PF04307 DUF457 [H]
EC number: NA
Molecular weight: Translated: 36886; Mature: 36886
Theoretical pI: Translated: 9.56; Mature: 9.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTGTHVVMGIALGALATVDPVVAGSSQAAIGIMTATIIGSQIPDIDTVLKLKNNADYIR CCCCHHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHEECCCHHHHH NHRGITHSLPMLAIWPLLISSILYFIFPAATFIHLLLWTFIAVGLHIFVDIFNAYGTQAV HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH RPFKETWVAFGFINTFDWFIFGSHVVAIAAWLLGSPVLATFVTLYVILALYYVARFVTQR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH MIKHAVQNLIPDSEEIIIASTIHFFQWRVAVTTKDHYYVGRAFKRNISIYEKFDRLPVPD HHHHHHHHHCCCCCCEEEEEEEEEEEEEEEEEECCCEEECHHHHHCCHHHHHHCCCCCCC NEIIRSAKKDKNLAAFISFSKVYNWRIEEKLDGTYVTFTDLRYRSNGHYPFVAVVKLDDD HHHHHHHHCCCCHHHEEEHHHHHCEEEHHCCCCCEEEEEEEEECCCCCCCEEEEEEECCC LKIISSYTGWIFSTEKLHKKLAPVSI HHHHHHHCCCEEEHHHHHHHCCCCCC >Mature Secondary Structure MDTGTHVVMGIALGALATVDPVVAGSSQAAIGIMTATIIGSQIPDIDTVLKLKNNADYIR CCCCHHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHEECCCHHHHH NHRGITHSLPMLAIWPLLISSILYFIFPAATFIHLLLWTFIAVGLHIFVDIFNAYGTQAV HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH RPFKETWVAFGFINTFDWFIFGSHVVAIAAWLLGSPVLATFVTLYVILALYYVARFVTQR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH MIKHAVQNLIPDSEEIIIASTIHFFQWRVAVTTKDHYYVGRAFKRNISIYEKFDRLPVPD HHHHHHHHHCCCCCCEEEEEEEEEEEEEEEEEECCCEEECHHHHHCCHHHHHHCCCCCCC NEIIRSAKKDKNLAAFISFSKVYNWRIEEKLDGTYVTFTDLRYRSNGHYPFVAVVKLDDD HHHHHHHHCCCCHHHEEEHHHHHCEEEHHCCCCCEEEEEEEEECCCCCCCEEEEEEECCC LKIISSYTGWIFSTEKLHKKLAPVSI HHHHHHHCCCEEEHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8946165; 9384377 [H]