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The map label for this gene is pepF1 [H]

Identifier: 116872922

GI number: 116872922

Start: 1501569

End: 1503377

Strand: Direct

Name: pepF1 [H]

Synonym: lwe1506

Alternate gene names: 116872922

Gene position: 1501569-1503377 (Clockwise)

Preceding gene: 116872909

Following gene: 116872929

Centisome position: 53.36

GC content: 36.43

Gene sequence:

>1809_bases
ATGTCAAAAGATTATGCATTAACATGGGATTTAGAAAATATATATGCTGGCGGTAGTGGTTCTGAAGAATTACAACAAAC
TCTAAAAGAGGTAAAAGCTGATTTAGATAGCTTTGTCGTAAATGTAGCAGAATGGGAAGTGCCTGAAAATGTAGAAGCTT
CTGTAGAATTTTTACTTCTAGTTAATCAAAATGCAGATATTTCTAAAATTTTACTGACAGCAAGTTCTTTTTTAGAATGC
CTAGCTTCAGCTGATATTAATGATACTCGCGCAAATGAACTTTCTGCGTTAATTTACCAATATGTTGCAACTCTTGCAAC
TGCTGAGGACGAATGGCATGATAAATTCGCACAAGTTTCTGACCGTGTTTGGAATGAATTAATGCAAGAAAATGGTTTAT
CACAAATCAGCTTTATTTTGAGTGAAGCACGCACAAATCGTCGTAAAAAAGGAAGTAAAGAACAAGAAGCAGCTATTAAT
TCTTTAGCTGTAGATGGTTATCGCGGTTGGTCTGATCACTATGATACGATCGTTTCGAAACTTCGCATGCACGTTACAAT
TGATGGGGAAGAAAAAGAGGTATCTGCTGGACAAGCACTGAATCTTCTTAATCATCCTGACCGCGCTGTTCGTCAAGTAG
TTTTCAAAGAATATACACGTGTTTGGCAAGAAGAATCTCGTTTGTTTAGCGATACTTTAAATCATTTATCTGGTTTTCGC
CTCGCTACATATGATATTCGTAAATGGGATAATATACTAGATGAACCTCTTGCAATTAATCGTTTAGATGAACAAACGTT
AAAATCTATGTGGAATGTTATTCAAACGAATAAGCCAACTTTTGTCCGATTTTTGGATAGAAAAGCGAAATTACTAGGTC
TAGAAAAATTAAGTTTTTATGATGTGGAAGCCCCTCTTGTATTCTCAAGTGAACCAAAAAAATATACGTATCAAGAAGGC
GCAGAATTTATTATAGAGCAATTCAATAAATTTAGTCCAAAAATGGCAAACTTTGCACAATCTGCTTTTGAAAAAGGTTG
GATAGAGGCAGAAGATCGTGATAACAAACGTCCGGGTGGTTTTTGTACAGACTTCCCTGTTGAGAAAGAAAGTCGTATCT
TCATGACTTATGATGGGGCTCCTGGAACAGTCGCAACACTTGCACATGAACTAGGACATGCCTTTCACTCTCATGTGATT
CGCGATGAGCCTTTTGAAAACACTGATTATGCCATGAATGTTGCAGAAACTGCCTCTACTTTTGCGGAGATGATTATTGC
AGATGCATCTGTGAAAGATGCGAAAACAAAAGAAGAGAAAATCACTTTACTAGAAGATAAAATTGGCCGTAGTATTGCCT
TTTTCATGAATATCCACGCTAGATTTATTTTCGAATGCAACTTCTATGAAGCGCGTAAACAAGGTGTCCTTTCTGTAGAT
AGACTTAATTCTTTGATGGAAGAAGCGCAACGTGAAGCTTACTTGGATTCATTAGATGAATATCACCCACAATTTTGGGC
TTCTAAGTTACACTTTTATATTGCTGATGTACCGTTTTATAATTTCCCATATACTTTTGGTTACTTATTCTCGCTTGGAA
TTTATCATAAAGCGCAGTCTGAAGGTGCTAGTTATGAAGATAAATATATTGCATTACTACAAGACACTGGTTCCATGACA
ACAGAACAACTTGCTGAAAAGCATCTCGGAGTAGACTTGCGAAAAGCGAATTTCTGGGAAGAAGCTGTGGCTCTTGCTGC
TAAAGATGTAGAAGATTTCCTTGCTTTAACAGAAGAATATGTAAAATAA

Upstream 100 bases:

>100_bases
TAATCTATAAATTTTACCATCTTTCTGCTTATTTTACAAAAAAATCTAAGAAAAATGCTATAATGTGAAAGGAAACGTTA
TTTCTTAAGGAGGCAAACAA

Downstream 100 bases:

>100_bases
GAAAATGCCTGGAGCTTAAAACTCCAGGCATTTTTTAGATTGTTTTTAGTAATTCGATAATACAAGTAGCAGATTGTTTC
GCTGCTAAATGGATAAATTC

Product: M3B family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 602; Mature: 601

Protein sequence:

>602_residues
MSKDYALTWDLENIYAGGSGSEELQQTLKEVKADLDSFVVNVAEWEVPENVEASVEFLLLVNQNADISKILLTASSFLEC
LASADINDTRANELSALIYQYVATLATAEDEWHDKFAQVSDRVWNELMQENGLSQISFILSEARTNRRKKGSKEQEAAIN
SLAVDGYRGWSDHYDTIVSKLRMHVTIDGEEKEVSAGQALNLLNHPDRAVRQVVFKEYTRVWQEESRLFSDTLNHLSGFR
LATYDIRKWDNILDEPLAINRLDEQTLKSMWNVIQTNKPTFVRFLDRKAKLLGLEKLSFYDVEAPLVFSSEPKKYTYQEG
AEFIIEQFNKFSPKMANFAQSAFEKGWIEAEDRDNKRPGGFCTDFPVEKESRIFMTYDGAPGTVATLAHELGHAFHSHVI
RDEPFENTDYAMNVAETASTFAEMIIADASVKDAKTKEEKITLLEDKIGRSIAFFMNIHARFIFECNFYEARKQGVLSVD
RLNSLMEEAQREAYLDSLDEYHPQFWASKLHFYIADVPFYNFPYTFGYLFSLGIYHKAQSEGASYEDKYIALLQDTGSMT
TEQLAEKHLGVDLRKANFWEEAVALAAKDVEDFLALTEEYVK

Sequences:

>Translated_602_residues
MSKDYALTWDLENIYAGGSGSEELQQTLKEVKADLDSFVVNVAEWEVPENVEASVEFLLLVNQNADISKILLTASSFLEC
LASADINDTRANELSALIYQYVATLATAEDEWHDKFAQVSDRVWNELMQENGLSQISFILSEARTNRRKKGSKEQEAAIN
SLAVDGYRGWSDHYDTIVSKLRMHVTIDGEEKEVSAGQALNLLNHPDRAVRQVVFKEYTRVWQEESRLFSDTLNHLSGFR
LATYDIRKWDNILDEPLAINRLDEQTLKSMWNVIQTNKPTFVRFLDRKAKLLGLEKLSFYDVEAPLVFSSEPKKYTYQEG
AEFIIEQFNKFSPKMANFAQSAFEKGWIEAEDRDNKRPGGFCTDFPVEKESRIFMTYDGAPGTVATLAHELGHAFHSHVI
RDEPFENTDYAMNVAETASTFAEMIIADASVKDAKTKEEKITLLEDKIGRSIAFFMNIHARFIFECNFYEARKQGVLSVD
RLNSLMEEAQREAYLDSLDEYHPQFWASKLHFYIADVPFYNFPYTFGYLFSLGIYHKAQSEGASYEDKYIALLQDTGSMT
TEQLAEKHLGVDLRKANFWEEAVALAAKDVEDFLALTEEYVK
>Mature_601_residues
SKDYALTWDLENIYAGGSGSEELQQTLKEVKADLDSFVVNVAEWEVPENVEASVEFLLLVNQNADISKILLTASSFLECL
ASADINDTRANELSALIYQYVATLATAEDEWHDKFAQVSDRVWNELMQENGLSQISFILSEARTNRRKKGSKEQEAAINS
LAVDGYRGWSDHYDTIVSKLRMHVTIDGEEKEVSAGQALNLLNHPDRAVRQVVFKEYTRVWQEESRLFSDTLNHLSGFRL
ATYDIRKWDNILDEPLAINRLDEQTLKSMWNVIQTNKPTFVRFLDRKAKLLGLEKLSFYDVEAPLVFSSEPKKYTYQEGA
EFIIEQFNKFSPKMANFAQSAFEKGWIEAEDRDNKRPGGFCTDFPVEKESRIFMTYDGAPGTVATLAHELGHAFHSHVIR
DEPFENTDYAMNVAETASTFAEMIIADASVKDAKTKEEKITLLEDKIGRSIAFFMNIHARFIFECNFYEARKQGVLSVDR
LNSLMEEAQREAYLDSLDEYHPQFWASKLHFYIADVPFYNFPYTFGYLFSLGIYHKAQSEGASYEDKYIALLQDTGSMTT
EQLAEKHLGVDLRKANFWEEAVALAAKDVEDFLALTEEYVK

Specific function: Hydrolyzes peptides containing between 7 and 17 amino acids with a rather wide specificity [H]

COG id: COG1164

COG function: function code E; Oligoendopeptidase F

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M3B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001567
- InterPro:   IPR004438
- InterPro:   IPR013647 [H]

Pfam domain/function: PF01432 Peptidase_M3; PF08439 Peptidase_M3_N [H]

EC number: NA

Molecular weight: Translated: 68906; Mature: 68775

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKDYALTWDLENIYAGGSGSEELQQTLKEVKADLDSFVVNVAEWEVPENVEASVEFLLL
CCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
VNQNADISKILLTASSFLECLASADINDTRANELSALIYQYVATLATAEDEWHDKFAQVS
ECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
DRVWNELMQENGLSQISFILSEARTNRRKKGSKEQEAAINSLAVDGYRGWSDHYDTIVSK
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
LRMHVTIDGEEKEVSAGQALNLLNHPDRAVRQVVFKEYTRVWQEESRLFSDTLNHLSGFR
HEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
LATYDIRKWDNILDEPLAINRLDEQTLKSMWNVIQTNKPTFVRFLDRKAKLLGLEKLSFY
EEEEHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHCCEE
DVEAPLVFSSEPKKYTYQEGAEFIIEQFNKFSPKMANFAQSAFEKGWIEAEDRDNKRPGG
ECCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
FCTDFPVEKESRIFMTYDGAPGTVATLAHELGHAFHSHVIRDEPFENTDYAMNVAETAST
CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
FAEMIIADASVKDAKTKEEKITLLEDKIGRSIAFFMNIHARFIFECNFYEARKQGVLSVD
HHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCEEEEEEECHHHHHHCCCEEHH
RLNSLMEEAQREAYLDSLDEYHPQFWASKLHFYIADVPFYNFPYTFGYLFSLGIYHKAQS
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHC
EGASYEDKYIALLQDTGSMTTEQLAEKHLGVDLRKANFWEEAVALAAKDVEDFLALTEEY
CCCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
VK
CC
>Mature Secondary Structure 
SKDYALTWDLENIYAGGSGSEELQQTLKEVKADLDSFVVNVAEWEVPENVEASVEFLLL
CCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
VNQNADISKILLTASSFLECLASADINDTRANELSALIYQYVATLATAEDEWHDKFAQVS
ECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
DRVWNELMQENGLSQISFILSEARTNRRKKGSKEQEAAINSLAVDGYRGWSDHYDTIVSK
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
LRMHVTIDGEEKEVSAGQALNLLNHPDRAVRQVVFKEYTRVWQEESRLFSDTLNHLSGFR
HEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
LATYDIRKWDNILDEPLAINRLDEQTLKSMWNVIQTNKPTFVRFLDRKAKLLGLEKLSFY
EEEEHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHCCEE
DVEAPLVFSSEPKKYTYQEGAEFIIEQFNKFSPKMANFAQSAFEKGWIEAEDRDNKRPGG
ECCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
FCTDFPVEKESRIFMTYDGAPGTVATLAHELGHAFHSHVIRDEPFENTDYAMNVAETAST
CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
FAEMIIADASVKDAKTKEEKITLLEDKIGRSIAFFMNIHARFIFECNFYEARKQGVLSVD
HHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCEEEEEEECHHHHHHCCCEEHH
RLNSLMEEAQREAYLDSLDEYHPQFWASKLHFYIADVPFYNFPYTFGYLFSLGIYHKAQS
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHC
EGASYEDKYIALLQDTGSMTTEQLAEKHLGVDLRKANFWEEAVALAAKDVEDFLALTEEY
CCCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
VK
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7798200; 9209029 [H]