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The map label for this gene is opuCB [H]

Identifier: 116872855

GI number: 116872855

Start: 1433812

End: 1435326

Strand: Direct

Name: opuCB [H]

Synonym: lwe1439

Alternate gene names: 116872855

Gene position: 1433812-1435326 (Clockwise)

Preceding gene: 116872854

Following gene: 116872864

Centisome position: 50.95

GC content: 34.39

Gene sequence:

>1515_bases
ATGAATACAATACTAGATACATTTGCCGTCCGTAAAGATGAACTGTTCACTGCTTTAGTACAGCATATTCAAATTTCGTT
TGTATCACTGTTTATTGCTGTGTTAATTGCCCTACCTCTTGGAATTTATTTAACAAGACATAAGCGACTTGCTGAACCAA
TTATTCAAGTAGCTGCTATTTTCCAAACAATACCGTCCCTTGCTCTACTAGGATTATTAATTCCTTTAGTTGGTATTGGA
ATAGTTCCAGCGATTATCGCGCTTGTTATTTATGCTCTTTTACCTATTTTAAGAAATACATATACTGGGATAAAAGAAGT
CGATCCGGCCCTTGTGGAAGCTTCACGTGCAATGGGAATGAACAAATGGAAAAGATTATATAAAGTACAACTACCCTTAG
CAATGCCAGTTATTATGGCAGGTATACGTACGGCGATGGTTTTAATTATCGGAACTGCGACACTTGCTGCACTAATTGGC
GCTGGAGGTCTTGGGGACTTAATTTTACTAGGAATTGACCGAAACGATAATAGTTTAATTTTACTTGGTGCTATTCCAGC
AGCTTTATTAGCTATTTTGTTTGATTTTCTGTTACGCTTTCTTGAAAAAGCATCATTTAAAAGTACGATTATCACCATTT
CTGCGGGGATTTTACTAACTGCAGCAATCATTGTTGTTCCTTATTTTGCTTCTGATAAAAAAGAAATTACGATTGCAGGG
AAATTAGGAGCAGAACCAGAAATTTTAATTAATATGTACAAGTTGGTTATTGAAGATGAAACAGATTTAAAAGTCAATGT
GAAACCTAATATGGGTAAAACGAGTTTTGTATTTAATGCTTTAAAATCAGGTGATATCGATATTTACCCAGAATTCACTG
GAACTGTATTAGAAACCTTCTTAAAAGAAAATGCAAAAACTCATGATCCAGAAAAAGTTTATAACCAAGCGCGTGACGGT
CTTGCAAAAGATTTTGATATGACGTTCTTGAAACCGATGAAATATAACAACACCTATGCACTTGCTGTTTCTCCTGAATT
TGCCAAAGAAAATAATTTAGAGAAAATATCTGATTTAGGTCCATTAGCAGATCAAGTAAAAGCTGGGTTCACACTTGAGT
TTAAAGACCGTTCAGATGGTTATAAAGGTATCCAAGATAAATATGGACTTACATTCTCGAACTTGAAGACGATGGAACCT
AAACTTCGCTATAATGCGATTAAATCTGGAGATATCAATTTGTTAGATGCTTATTCTACAGATAGTGAATTGGCCCAATA
CAAATTGAAAGTACTTGAAGATGATCAACAACTCTTCCCTCCTTATCAAGGCGCACCTCTTATGTTGACGAAGACATTAG
ATAAATATCCTGAGCTGAAAAAACCATTAAATAAACTTGCTGGGAAAATTACTGATGACGAAATGCGTAAATTAAACTAT
GAAGTAAATGTAAATGGTAAATCAGCTTATACTGTTGCTAAAGATTATTTACAGGATCAAGGAATCATTAAATAA

Upstream 100 bases:

>100_bases
TACCTGTGATGGATGAAAATGGGAATTTCATTGGCACGATTACTAATAAACATGTCATGCAATTTTTAGCGCGTCATTTA
GAAAGTTCGGGTGAGCTTGT

Downstream 100 bases:

>100_bases
AGAAGAAGCTAGGTGGTGTATAAACCACTTAGCTTCTTTTTTATTGTCTGATTAAATTTTTAACTTTATTAATGTTAGGT
TTGTAGAAGCGACAATGTGT

Product: glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 504; Mature: 504

Protein sequence:

>504_residues
MNTILDTFAVRKDELFTALVQHIQISFVSLFIAVLIALPLGIYLTRHKRLAEPIIQVAAIFQTIPSLALLGLLIPLVGIG
IVPAIIALVIYALLPILRNTYTGIKEVDPALVEASRAMGMNKWKRLYKVQLPLAMPVIMAGIRTAMVLIIGTATLAALIG
AGGLGDLILLGIDRNDNSLILLGAIPAALLAILFDFLLRFLEKASFKSTIITISAGILLTAAIIVVPYFASDKKEITIAG
KLGAEPEILINMYKLVIEDETDLKVNVKPNMGKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEKVYNQARDG
LAKDFDMTFLKPMKYNNTYALAVSPEFAKENNLEKISDLGPLADQVKAGFTLEFKDRSDGYKGIQDKYGLTFSNLKTMEP
KLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDQQLFPPYQGAPLMLTKTLDKYPELKKPLNKLAGKITDDEMRKLNY
EVNVNGKSAYTVAKDYLQDQGIIK

Sequences:

>Translated_504_residues
MNTILDTFAVRKDELFTALVQHIQISFVSLFIAVLIALPLGIYLTRHKRLAEPIIQVAAIFQTIPSLALLGLLIPLVGIG
IVPAIIALVIYALLPILRNTYTGIKEVDPALVEASRAMGMNKWKRLYKVQLPLAMPVIMAGIRTAMVLIIGTATLAALIG
AGGLGDLILLGIDRNDNSLILLGAIPAALLAILFDFLLRFLEKASFKSTIITISAGILLTAAIIVVPYFASDKKEITIAG
KLGAEPEILINMYKLVIEDETDLKVNVKPNMGKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEKVYNQARDG
LAKDFDMTFLKPMKYNNTYALAVSPEFAKENNLEKISDLGPLADQVKAGFTLEFKDRSDGYKGIQDKYGLTFSNLKTMEP
KLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDQQLFPPYQGAPLMLTKTLDKYPELKKPLNKLAGKITDDEMRKLNY
EVNVNGKSAYTVAKDYLQDQGIIK
>Mature_504_residues
MNTILDTFAVRKDELFTALVQHIQISFVSLFIAVLIALPLGIYLTRHKRLAEPIIQVAAIFQTIPSLALLGLLIPLVGIG
IVPAIIALVIYALLPILRNTYTGIKEVDPALVEASRAMGMNKWKRLYKVQLPLAMPVIMAGIRTAMVLIIGTATLAALIG
AGGLGDLILLGIDRNDNSLILLGAIPAALLAILFDFLLRFLEKASFKSTIITISAGILLTAAIIVVPYFASDKKEITIAG
KLGAEPEILINMYKLVIEDETDLKVNVKPNMGKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEKVYNQARDG
LAKDFDMTFLKPMKYNNTYALAVSPEFAKENNLEKISDLGPLADQVKAGFTLEFKDRSDGYKGIQDKYGLTFSNLKTMEP
KLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDQQLFPPYQGAPLMLTKTLDKYPELKKPLNKLAGKITDDEMRKLNY
EVNVNGKSAYTVAKDYLQDQGIIK

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788451, Length=220, Percent_Identity=39.0909090909091, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1788449, Length=199, Percent_Identity=40.2010050251256, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1789033, Length=173, Percent_Identity=41.0404624277457, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1788452, Length=306, Percent_Identity=27.1241830065359, Blast_Score=111, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 55643; Mature: 55643

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTILDTFAVRKDELFTALVQHIQISFVSLFIAVLIALPLGIYLTRHKRLAEPIIQVAAI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FQTIPSLALLGLLIPLVGIGIVPAIIALVIYALLPILRNTYTGIKEVDPALVEASRAMGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCH
NKWKRLYKVQLPLAMPVIMAGIRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNDNSLI
HHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEE
LLGAIPAALLAILFDFLLRFLEKASFKSTIITISAGILLTAAIIVVPYFASDKKEITIAG
EEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEE
KLGAEPEILINMYKLVIEDETDLKVNVKPNMGKTSFVFNALKSGDIDIYPEFTGTVLETF
CCCCCHHHHHHHHHHHEECCCCEEEEECCCCCCHHHHHHHHCCCCEEEECCHHHHHHHHH
LKENAKTHDPEKVYNQARDGLAKDFDMTFLKPMKYNNTYALAVSPEFAKENNLEKISDLG
HHCCCCCCCHHHHHHHHHCCCCCCCCHHHCCCEECCCEEEEEECCCHHCCCCHHHHHHCC
PLADQVKAGFTLEFKDRSDGYKGIQDKYGLTFSNLKTMEPKLRYNAIKSGDINLLDAYST
CHHHHHHCCCEEEECCCCCCCCCCHHHCCCCHHCCHHCCCHHHHCCCCCCCCEEEECCCC
DSELAQYKLKVLEDDQQLFPPYQGAPLMLTKTLDKYPELKKPLNKLAGKITDDEMRKLNY
HHHHHHHHHHHHCCCHHHCCCCCCCCEEEHHHHHHCHHHHHHHHHHHCCCCCHHHHHCCE
EVNVNGKSAYTVAKDYLQDQGIIK
EEEECCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNTILDTFAVRKDELFTALVQHIQISFVSLFIAVLIALPLGIYLTRHKRLAEPIIQVAAI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FQTIPSLALLGLLIPLVGIGIVPAIIALVIYALLPILRNTYTGIKEVDPALVEASRAMGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCH
NKWKRLYKVQLPLAMPVIMAGIRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNDNSLI
HHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEE
LLGAIPAALLAILFDFLLRFLEKASFKSTIITISAGILLTAAIIVVPYFASDKKEITIAG
EEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEE
KLGAEPEILINMYKLVIEDETDLKVNVKPNMGKTSFVFNALKSGDIDIYPEFTGTVLETF
CCCCCHHHHHHHHHHHEECCCCEEEEECCCCCCHHHHHHHHCCCCEEEECCHHHHHHHHH
LKENAKTHDPEKVYNQARDGLAKDFDMTFLKPMKYNNTYALAVSPEFAKENNLEKISDLG
HHCCCCCCCHHHHHHHHHCCCCCCCCHHHCCCEECCCEEEEEECCCHHCCCCHHHHHHCC
PLADQVKAGFTLEFKDRSDGYKGIQDKYGLTFSNLKTMEPKLRYNAIKSGDINLLDAYST
CHHHHHHCCCEEEECCCCCCCCCCHHHCCCCHHCCHHCCCHHHHCCCCCCCCEEEECCCC
DSELAQYKLKVLEDDQQLFPPYQGAPLMLTKTLDKYPELKKPLNKLAGKITDDEMRKLNY
HHHHHHHHHHHHCCCHHHCCCCCCCCEEEHHHHHHCHHHHHHHHHHHCCCCCHHHHHCCE
EVNVNGKSAYTVAKDYLQDQGIIK
EEEECCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]